| SRR4457249 | 2nd_leaf | DAH4 | 0.66 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.64 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.98 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.67 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.56 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.33 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.37 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.36 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.71 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.83 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.30 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.54 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.94 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.68 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.44 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.00 | MC |
| SRR6320473 | carpel | wt | 5.48 | MC |
| SRR6320498 | carpel | wt | 1.32 | MC |
| SRR5560727 | caryopsis | wild_type | 0.53 | MC |
| SRR5560728 | caryopsis | wild_type | 0.65 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.50 | MC |
| SRR4947495 | root | control | 0.84 | MC |
| SRR7265400 | coleoptile | 2dA | 0.30 | MC |
| SRR7265401 | coleoptile | 2dA | 0.36 | MC |
| SRR7265402 | coleoptile | 2dA | 0.37 | MC |
| SRR7265404 | coleoptile | 2dN | 0.36 | MC |
| SRR7265406 | coleoptile | 3dA | 1.04 | MC |
| SRR7265407 | coleoptile | 3dA | 1.16 | MC |
| SRR7265408 | coleoptile | 3dA | 0.57 | MC |
| SRR7265412 | coleoptile | 4dA | 0.83 | MC |
| SRR7265414 | coleoptile | 4dA | 1.00 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.10 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.49 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.71 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.11 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.70 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.45 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.14 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.55 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.85 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.49 | MC |
| SRR7265381 | embryo | 1hN | 0.31 | MC |
| SRR7265390 | embryo | 12hA | 0.43 | MC |
| SRR7265394 | embryo | 24hA | 1.93 | MC |
| SRR7265395 | embryo | 24hA | 0.70 | MC |
| SRR7265396 | embryo | 24hA | 1.00 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.51 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.91 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.04 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.70 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.64 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.39 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.13 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.01 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.03 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.40 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.66 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.49 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.71 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.34 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.16 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.44 | MC |
| SRR8060836 | leaf | wild_type | 1.31 | MC |
| SRR8060837 | leaf | wild_type | 0.28 | MC |
| SRR8240824 | leaf | wild_type | 0.31 | MC |
| SRR8240825 | leaf | wild_type | 0.27 | MC |
| SRR8240826 | leaf | wild_type | 0.35 | MC |
| SRR8240819 | leaf | wild_type | 0.25 | MC |
| SRR8240820 | leaf | wild_type | 0.47 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.81 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.29 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.06 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.57 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.72 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.39 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.02 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.57 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.53 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.44 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.48 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.51 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.54 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.28 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.21 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.10 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.73 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.82 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.56 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.40 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.68 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.90 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.68 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.90 | MC |
| SRR1761528 | leaf | drought | 0.68 | MC |
| SRR1761529 | leaf | drought | 0.90 | MC |
| SRR504365 | leaf | wt | 0.35 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.99 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.29 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.83 | MC |
| SRR6417967 | leaf | H2O_control | 2.21 | MC |
| SRR6417968 | leaf | H2O_control | 1.75 | MC |
| SRR6417969 | leaf | H2O_control | 1.98 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.56 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.57 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.63 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.28 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.95 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.78 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.28 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.57 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.44 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.65 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.27 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.33 | MC |
| SRR1213692 | leaf | wt | 0.32 | MC |
| SRR1213693 | leaf | wt | 0.77 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.73 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.50 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.79 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.56 | MC |
| SRR5856927 | leaf | control | 0.42 | MC |
| SRR5856928 | leaf | control | 1.13 | MC |
| SRR5856929 | leaf | control | 0.95 | MC |
| SRR5856933 | leaf | control | 0.44 | MC |
| SRR5856934 | leaf | control | 0.52 | MC |
| SRR5856935 | leaf | control | 0.34 | MC |
| SRR5856936 | leaf | salt | 0.19 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.27 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.57 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 5.64 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.74 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.98 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.61 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.99 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.75 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR6168980 | leaf | none (control) | 1.30 | MC |
| SRR6168981 | leaf | none (control) | 0.65 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.82 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.69 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.56 | MC |
| SRR8582890 | panicle | AM | 0.68 | MC |
| SRR5110429 | panicle | Dawn | 2.59 | MC |
| SRR5110431 | panicle | Dawn | 2.08 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.10 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.06 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.32 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.66 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.52 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.42 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.72 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.43 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.38 | MC |
| SRR5110445 | panicle | Dusk | 1.66 | MC |
| SRR5110446 | panicle | Dusk | 2.33 | MC |
| SRR5110447 | panicle | Dusk | 0.80 | MC |
| SRR5110448 | panicle | Dusk | 2.15 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.95 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.15 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.47 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.92 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.00 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.69 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.90 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.17 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.61 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.54 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.65 | MC |
| SRR5126147 | root | "mock,1_day" | 0.41 | MC |
| SRR5126148 | root | "mock,1_day" | 0.57 | MC |
| SRR5126153 | root | "mock,7_days" | 0.37 | MC |
| SRR5126155 | root | "mock,7_days" | 1.06 | MC |
| SRR5126157 | root | "mock,7_days" | 0.61 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.22 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.64 | MC |
| SRR5126165 | root | "mock,14_days" | 2.66 | MC |
| SRR5126167 | root | "mock,14_days" | 2.11 | MC |
| SRR5126169 | root | "mock,14_days" | 0.49 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.25 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.03 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.51 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.74 | MC |
| SRR1213695 | root | wt | 0.54 | MC |
| SRR4947480 | root | control | 0.79 | MC |
| SRR4947482 | root | Al | 0.88 | MC |
| SRR4947483 | root | Al | 0.78 | MC |
| SRR4947487 | root | control | 0.91 | MC |
| SRR4947497 | root | control | 1.81 | MC |
| SRR4947499 | root | Al | 1.22 | MC |
| SRR4947503 | root | control | 0.93 | MC |
| SRR4947506 | root | Al | 0.68 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.40 | MC |
| SRR6441554 | seedling | wild_type | 0.48 | MC |
| SRR6441555 | seedling | wild_type | 0.73 | MC |
| SRR2154086 | seedling | wt | 0.98 | MC |
| SRR2154082 | seedling | wt | 0.53 | MC |
| SRR2154083 | seedling | wt | 2.74 | MC |
| SRR2154084 | seedling | wt | 1.85 | MC |
| SRR2154085 | seedling | wt | 0.88 | MC |
| SRR2154087 | seedling | wt | 1.90 | MC |
| SRR3098741 | seedling | wt | 0.83 | MC |
| SRR3098743 | seedling | wt | 0.27 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.71 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.05 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.78 | MC |
| SRR1944583 | seedling | no_treatment | 0.80 | MC |
| SRR358793 | seedling | wt | 0.73 | MC |
| SRR358794 | seedling | wt | 0.69 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.57 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.58 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.21 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.32 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.91 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.67 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.90 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.31 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.59 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.15 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.00 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.83 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.37 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.40 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.65 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.36 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.72 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.30 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.94 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.70 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.43 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.59 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.51 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.59 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.19 | MC |