| SRR4457258 | 2nd_leaf | DAH28 | 0.48 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.68 | MC |
| SRR358798 | callus | wt | 1.12 | MC |
| SRR5560727 | caryopsis | wild_type | 0.80 | MC |
| SRR5560728 | caryopsis | wild_type | 1.32 | MC |
| SRR5560729 | caryopsis | wild_type | 0.99 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.24 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.89 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.65 | MC |
| SRR7265400 | coleoptile | 2dA | 1.94 | MC |
| SRR7265401 | coleoptile | 2dA | 1.54 | MC |
| SRR7265402 | coleoptile | 2dA | 1.24 | MC |
| SRR7265403 | coleoptile | 2dN | 0.98 | MC |
| SRR7265404 | coleoptile | 2dN | 1.14 | MC |
| SRR7265405 | coleoptile | 2dN | 1.48 | MC |
| SRR7265406 | coleoptile | 3dA | 1.00 | MC |
| SRR7265407 | coleoptile | 3dA | 0.49 | MC |
| SRR7265408 | coleoptile | 3dA | 0.71 | MC |
| SRR7265409 | coleoptile | 3dN | 0.68 | MC |
| SRR7265413 | coleoptile | 4dA | 4.21 | MC |
| SRR7265414 | coleoptile | 4dA | 1.11 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.88 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.55 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.68 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.88 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.01 | MC |
| SRR7265376 | embryo | 1hA | 1.24 | MC |
| SRR7265377 | embryo | 1hA | 0.50 | MC |
| SRR7265378 | embryo | 1hA | 1.17 | MC |
| SRR7265379 | embryo | 1hN | 1.54 | MC |
| SRR7265381 | embryo | 1hN | 0.87 | MC |
| SRR7265382 | embryo | 3hA | 0.97 | MC |
| SRR7265383 | embryo | 3hA | 2.14 | MC |
| SRR7265384 | embryo | 3hA | 1.88 | MC |
| SRR7265386 | embryo | 3hN | 1.10 | MC |
| SRR7265387 | embryo | 3hN | 1.02 | MC |
| SRR7265388 | embryo | 12hA | 1.72 | MC |
| SRR7265389 | embryo | 12hA | 3.76 | MC |
| SRR7265390 | embryo | 12hA | 2.35 | MC |
| SRR7265391 | embryo | 12hN | 1.39 | MC |
| SRR7265393 | embryo | 12hN | 2.16 | MC |
| SRR7265396 | embryo | 24hA | 1.40 | MC |
| SRR7265397 | embryo | 24hN | 0.62 | MC |
| SRR7265398 | embryo | 24hN | 1.34 | MC |
| SRR7265399 | embryo | 24hN | 0.83 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.79 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.19 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.53 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.32 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.70 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.54 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.60 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.63 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.38 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.64 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.70 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.63 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.45 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.26 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.04 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.34 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.81 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.41 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.89 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.87 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.89 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.87 | MC |
| SRR1761528 | leaf | drought | 0.89 | MC |
| SRR1761529 | leaf | drought | 0.87 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.52 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.90 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.30 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.25 | MC |
| SRR6502088 | leaf | control | 2.74 | MC |
| SRR6502089 | leaf | control | 1.22 | MC |
| SRR6502090 | leaf | control | 2.40 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 4.09 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.89 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.39 | MC |
| SRR6502100 | leaf | control | 2.21 | MC |
| SRR6502101 | leaf | control | 3.75 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.69 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.79 | MC |
| SRR6168980 | leaf | none (control) | 0.18 | MC |
| SRR6168981 | leaf | none (control) | 0.68 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.81 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.45 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.55 | MC |
| SRR8582891 | panicle | PM | 4.28 | MC |
| SRR8582893 | panicle | PM | 4.11 | MC |
| SRR4947496 | root | control | 3.56 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.98 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.90 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.23 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.98 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.61 | MC |
| SRR5110445 | panicle | Dusk | 1.65 | MC |
| SRR5110447 | panicle | Dusk | 0.68 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.48 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.34 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.25 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.71 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.72 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.24 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.69 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.68 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.48 | MC |
| SRR5126147 | root | "mock,1_day" | 1.70 | MC |
| SRR5126148 | root | "mock,1_day" | 1.10 | MC |
| SRR5126149 | root | "mock,1_day" | 2.07 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.15 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.84 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.44 | MC |
| SRR5126153 | root | "mock,7_days" | 2.86 | MC |
| SRR5126155 | root | "mock,7_days" | 3.67 | MC |
| SRR5126157 | root | "mock,7_days" | 4.69 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.91 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.57 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.16 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.09 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.24 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.66 | MC |
| SRR4947480 | root | control | 5.05 | MC |
| SRR4947481 | root | control | 4.44 | MC |
| SRR4947482 | root | Al | 0.88 | MC |
| SRR4947484 | root | Al | 4.39 | MC |
| SRR4947485 | root | Al | 1.73 | MC |
| SRR4947488 | root | control | 2.97 | MC |
| SRR4947489 | root | control | 2.43 | MC |
| SRR4947490 | root | Al | 0.53 | MC |
| SRR4947492 | root | Al | 2.83 | MC |
| SRR4947493 | root | Al | 2.76 | MC |
| SRR4947497 | root | control | 1.58 | MC |
| SRR4947500 | root | Al | 2.04 | MC |
| SRR4947501 | root | Al | 2.45 | MC |
| SRR4947502 | root | control | 0.85 | MC |
| SRR4947506 | root | Al | 1.90 | MC |
| SRR4947507 | root | Al | 0.79 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.37 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.94 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.25 | MC |
| SRR6502095 | root | control | 2.01 | MC |
| SRR6502096 | root | control | 1.27 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.78 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.37 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.09 | MC |
| SRR6502106 | root | control | 2.76 | MC |
| SRR6502107 | root | control | 2.94 | MC |
| SRR6502108 | root | control | 1.98 | MC |
| SRR6441554 | seedling | wild_type | 1.77 | MC |
| SRR6441555 | seedling | wild_type | 1.15 | MC |
| SRR2154086 | seedling | wt | 3.49 | MC |
| SRR2154083 | seedling | wt | 0.51 | MC |
| SRR2154084 | seedling | wt | 0.64 | MC |
| SRR2154085 | seedling | wt | 2.13 | MC |
| SRR2154087 | seedling | wt | 1.67 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.83 | MC |
| SRR1944583 | seedling | no_treatment | 1.02 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.36 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.33 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.60 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.54 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.44 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.20 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.09 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.82 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.72 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.38 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.49 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.39 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.61 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.65 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.29 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.45 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.09 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.69 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.14 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.41 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.89 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.56 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.56 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.60 | MC |