| SRR4457250 | 2nd_leaf | DAH4 | 1.52 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.72 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.74 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.47 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 4.53 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.97 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.71 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.00 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.18 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.44 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 4.50 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.09 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.79 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.41 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 3.87 | MC |
| SRR3745126 | anther | wt | 1.43 | MC |
| SRR5560729 | caryopsis | wild_type | 0.39 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.52 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR4947495 | root | control | 0.48 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.25 | MC |
| SRR7265400 | coleoptile | 2dA | 2.39 | MC |
| SRR7265401 | coleoptile | 2dA | 1.95 | MC |
| SRR7265402 | coleoptile | 2dA | 2.17 | MC |
| SRR7265403 | coleoptile | 2dN | 0.33 | MC |
| SRR7265405 | coleoptile | 2dN | 0.63 | MC |
| SRR7265410 | coleoptile | 3dN | 0.58 | MC |
| SRR7265411 | coleoptile | 3dN | 0.69 | MC |
| SRR7265417 | coleoptile | 4dN | 0.62 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.47 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR7265376 | embryo | 1hA | 0.86 | MC |
| SRR7265378 | embryo | 1hA | 0.48 | MC |
| SRR7265379 | embryo | 1hN | 0.36 | MC |
| SRR7265386 | embryo | 3hN | 0.24 | MC |
| SRR7265388 | embryo | 12hA | 1.76 | MC |
| SRR7265389 | embryo | 12hA | 4.61 | MC |
| SRR7265390 | embryo | 12hA | 1.76 | MC |
| SRR7265393 | embryo | 12hN | 1.01 | MC |
| SRR7265394 | embryo | 24hA | 2.13 | MC |
| SRR7265395 | embryo | 24hA | 1.71 | MC |
| SRR7265396 | embryo | 24hA | 1.90 | MC |
| SRR7265399 | embryo | 24hN | 0.65 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.99 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.46 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.26 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.82 | MC |
| SRR4457235 | flag_leaf | DAH12 | 3.03 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.93 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.23 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.14 | MC |
| SRR4457239 | flag_leaf | DAH20 | 4.23 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.13 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.45 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.06 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.36 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.09 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.30 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.76 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.49 | MC |
| SRR1213691 | flower | wt | 0.83 | MC |
| SRR8060836 | leaf | wild_type | 0.96 | MC |
| SRR8060837 | leaf | wild_type | 0.21 | MC |
| SRR8240820 | leaf | wild_type | 0.91 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.52 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.70 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.70 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.72 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.64 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.82 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.58 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.57 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.32 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.55 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.83 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.92 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.49 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.25 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.14 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.51 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.79 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.38 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.82 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.12 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.81 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.78 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.81 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.78 | MC |
| SRR1761529 | leaf | drought | 0.81 | MC |
| SRR1761530 | leaf | control | 0.78 | MC |
| SRR504365 | leaf | wt | 1.07 | MC |
| SRR6417967 | leaf | H2O_control | 0.84 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.97 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.81 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.65 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.99 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.84 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.20 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.56 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.64 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.49 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.55 | MC |
| SRR1213693 | leaf | wt | 2.17 | MC |
| SRR6502088 | leaf | control | 0.82 | MC |
| SRR6502101 | leaf | control | 0.94 | MC |
| SRR5856927 | leaf | control | 0.99 | MC |
| SRR5856928 | leaf | control | 0.32 | MC |
| SRR5856930 | leaf | salt | 0.17 | MC |
| SRR5856933 | leaf | control | 0.54 | MC |
| SRR5856935 | leaf | control | 0.31 | MC |
| SRR5856936 | leaf | salt | 0.14 | MC |
| SRR5856937 | leaf | salt | 0.17 | MC |
| SRR6168980 | leaf | none (control) | 0.41 | MC |
| SRR8582888 | panicle | AM | 0.30 | MC |
| SRR8582890 | panicle | AM | 0.41 | MC |
| SRR8582893 | panicle | PM | 0.51 | MC |
| SRR5110430 | panicle | Dawn | 0.58 | MC |
| SRR5110431 | panicle | Dawn | 0.91 | MC |
| SRR5110432 | panicle | Dawn | 0.70 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.38 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.44 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.63 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.98 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.67 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.99 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.49 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.38 | MC |
| SRR5126147 | root | "mock,1_day" | 1.31 | MC |
| SRR5126148 | root | "mock,1_day" | 0.45 | MC |
| SRR5126149 | root | "mock,1_day" | 2.20 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.27 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.83 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.73 | MC |
| SRR5126153 | root | "mock,7_days" | 1.56 | MC |
| SRR5126155 | root | "mock,7_days" | 1.49 | MC |
| SRR5126157 | root | "mock,7_days" | 1.69 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.98 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.13 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.98 | MC |
| SRR5126165 | root | "mock,14_days" | 2.85 | MC |
| SRR5126167 | root | "mock,14_days" | 0.54 | MC |
| SRR5126169 | root | "mock,14_days" | 2.80 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.92 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.18 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.30 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.78 | MC |
| SRR1213694 | root | wt | 0.23 | MC |
| SRR1213695 | root | wt | 1.00 | MC |
| SRR4947480 | root | control | 0.50 | MC |
| SRR4947499 | root | Al | 0.73 | MC |
| SRR6502096 | root | control | 0.57 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.42 | MC |
| SRR6502106 | root | control | 0.68 | MC |
| SRR6502107 | root | control | 0.27 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.08 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.71 | MC |
| SRR2154086 | seedling | wt | 0.55 | MC |
| SRR2154082 | seedling | wt | 0.54 | MC |
| SRR3098741 | seedling | wt | 0.31 | MC |
| SRR3098742 | seedling | wt | 0.45 | MC |
| SRR3098743 | seedling | wt | 1.06 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.88 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.24 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.65 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.75 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.44 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.66 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.49 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.72 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.36 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.56 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.81 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.32 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.75 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.95 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.03 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.68 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.71 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.64 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.65 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.20 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |