| SRR5560729 | caryopsis | wild_type | 0.33 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.48 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.38 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.59 | MC |
| SRR7265380 | embryo | 1hN | 0.37 | MC |
| SRR7265386 | embryo | 3hN | 0.33 | MC |
| SRR7265394 | embryo | 24hA | 0.60 | MC |
| SRR7265396 | embryo | 24hA | 0.52 | MC |
| SRR1213691 | flower | wt | 0.39 | MC |
| SRR8240824 | leaf | wild_type | 0.94 | MC |
| SRR8240825 | leaf | wild_type | 0.41 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.50 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.62 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.90 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.93 | MC |
| SRR504365 | leaf | wt | 0.20 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.35 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.65 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.37 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.80 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.64 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.54 | MC |
| SRR1213692 | leaf | wt | 0.42 | MC |
| SRR6502088 | leaf | control | 0.48 | MC |
| SRR6502089 | leaf | control | 0.43 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.80 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.20 | MC |
| SRR6502100 | leaf | control | 0.66 | MC |
| SRR6502101 | leaf | control | 1.24 | MC |
| SRR6502102 | leaf | control | 0.38 | MC |
| SRR5856936 | leaf | salt | 0.14 | MC |
| SRR6168973 | leaf | none (control) | 1.71 | MC |
| SRR6168974 | leaf | none (control) | 0.82 | MC |
| SRR6168975 | leaf | none (control) | 0.98 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.76 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.29 | MC |
| SRR8582888 | panicle | AM | 0.35 | MC |
| SRR8582889 | panicle | AM | 0.22 | MC |
| SRR8582891 | panicle | PM | 1.12 | MC |
| SRR8582893 | panicle | PM | 0.66 | MC |
| SRR1633185 | panicle | WT | 0.53 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.97 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.99 | MC |
| SRR6441554 | seedling | wild_type | 0.44 | MC |
| SRR6441555 | seedling | wild_type | 0.30 | MC |
| SRR2154086 | seedling | wt | 1.01 | MC |
| SRR2154087 | seedling | wt | 0.56 | MC |
| SRR3098741 | seedling | wt | 1.01 | MC |
| SRR3098743 | seedling | wt | 1.43 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.47 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.15 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.15 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.75 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.02 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.78 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.92 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.42 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.31 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.40 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.18 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.80 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.37 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.19 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.39 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.63 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.28 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.66 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.53 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.58 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.63 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.49 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.54 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.48 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.45 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.99 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.48 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.49 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.33 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.72 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.40 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.89 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.86 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.84 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.80 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.38 | MC |