| SRR4457249 | 2nd_leaf | DAH4 | 5.10 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.76 | MC |
| SRR3745125 | anther | wt | 2.25 | MC |
| SRR3745126 | anther | wt | 2.96 | MC |
| SRR3745127 | anther | wt | 1.70 | MC |
| SRR358795 | callus | wt | 6.51 | MC |
| SRR358797 | callus | wt | 7.90 | MC |
| SRR358798 | callus | wt | 8.94 | MC |
| SRR6320498 | carpel | wt | 5.94 | MC |
| SRR5560727 | caryopsis | wild_type | 4.51 | MC |
| SRR5560728 | caryopsis | wild_type | 4.10 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.87 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.27 | MC |
| SRR4947495 | root | control | 3.42 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.98 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.05 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.49 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.90 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.84 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.88 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.21 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.59 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.21 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.61 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.05 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.27 | MC |
| SRR2338866 | endosprem | control | 2.85 | MC |
| SRR2338867 | endosprem | control | 2.12 | MC |
| SRR2338868 | endosprem | high_temperature | 0.64 | MC |
| SRR2338869 | endosprem | high_temperature | 1.83 | MC |
| SRR8060835 | leaf | wild_type | 1.28 | MC |
| SRR8060837 | leaf | wild_type | 1.30 | MC |
| SRR8240824 | leaf | wild_type | 1.34 | MC |
| SRR8240825 | leaf | wild_type | 0.51 | MC |
| SRR8240826 | leaf | wild_type | 0.50 | MC |
| SRR8240818 | leaf | wild_type | 0.63 | MC |
| SRR8240819 | leaf | wild_type | 0.80 | MC |
| SRR8240820 | leaf | wild_type | 1.34 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.45 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.94 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.26 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.26 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.02 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.88 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.81 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.54 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.51 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.97 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.24 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.00 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.24 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.00 | MC |
| SRR1761529 | leaf | drought | 5.24 | MC |
| SRR1761531 | leaf | control | 5.00 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.17 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.05 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.72 | MC |
| SRR6417967 | leaf | H2O_control | 2.18 | MC |
| SRR6417968 | leaf | H2O_control | 1.80 | MC |
| SRR6417969 | leaf | H2O_control | 2.13 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.63 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.83 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.95 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.29 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.32 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.93 | MC |
| SRR6502090 | leaf | control | 2.92 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.92 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.38 | MC |
| SRR6502101 | leaf | control | 3.90 | MC |
| SRR5856927 | leaf | control | 1.15 | MC |
| SRR5856928 | leaf | control | 1.70 | MC |
| SRR5856929 | leaf | control | 1.91 | MC |
| SRR5856930 | leaf | salt | 1.65 | MC |
| SRR5856932 | leaf | salt | 1.09 | MC |
| SRR5856934 | leaf | control | 2.25 | MC |
| SRR5856936 | leaf | salt | 1.78 | MC |
| SRR5856938 | leaf | salt | 1.86 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.85 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.46 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.67 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 5.49 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.26 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 4.05 | MC |
| SRR6168973 | leaf | none (control) | 1.95 | MC |
| SRR6168974 | leaf | none (control) | 2.16 | MC |
| SRR6168975 | leaf | none (control) | 1.86 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.43 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.07 | MC |
| SRR6168979 | leaf | none (control) | 0.56 | MC |
| SRR6168980 | leaf | none (control) | 0.77 | MC |
| SRR6168981 | leaf | none (control) | 1.25 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.12 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.30 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.73 | MC |
| SRR8582888 | panicle | AM | 1.13 | MC |
| SRR8582889 | panicle | AM | 0.75 | MC |
| SRR8582890 | panicle | AM | 1.45 | MC |
| SRR8582891 | panicle | PM | 3.52 | MC |
| SRR8582892 | panicle | PM | 5.98 | MC |
| SRR8582893 | panicle | PM | 2.15 | MC |
| SRR4947496 | root | control | 2.29 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.23 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 4.30 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.38 | MC |
| SRR5110438 | panicle | Dawn + 7h | 4.02 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.54 | MC |
| SRR5110449 | panicle | Dawn + 14h | 6.08 | MC |
| SRR5126147 | root | "mock,1_day" | 2.89 | MC |
| SRR5126148 | root | "mock,1_day" | 2.76 | MC |
| SRR5126149 | root | "mock,1_day" | 4.00 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.64 | MC |
| SRR4947478 | root | control | 2.58 | MC |
| SRR4947479 | root | control | 1.47 | MC |
| SRR4947480 | root | control | 1.86 | MC |
| SRR4947481 | root | control | 4.32 | MC |
| SRR4947483 | root | Al | 2.95 | MC |
| SRR4947484 | root | Al | 3.53 | MC |
| SRR4947485 | root | Al | 3.33 | MC |
| SRR4947487 | root | control | 1.67 | MC |
| SRR4947488 | root | control | 2.17 | MC |
| SRR4947489 | root | control | 0.73 | MC |
| SRR4947490 | root | Al | 3.26 | MC |
| SRR4947491 | root | Al | 2.69 | MC |
| SRR4947492 | root | Al | 2.85 | MC |
| SRR4947493 | root | Al | 2.84 | MC |
| SRR4947494 | root | control | 2.73 | MC |
| SRR4947497 | root | control | 2.40 | MC |
| SRR4947498 | root | Al | 3.14 | MC |
| SRR4947499 | root | Al | 2.83 | MC |
| SRR4947500 | root | Al | 4.64 | MC |
| SRR4947501 | root | Al | 3.89 | MC |
| SRR4947502 | root | control | 3.48 | MC |
| SRR4947503 | root | control | 2.64 | MC |
| SRR4947504 | root | control | 2.41 | MC |
| SRR4947505 | root | control | 2.41 | MC |
| SRR4947506 | root | Al | 3.41 | MC |
| SRR4947507 | root | Al | 4.10 | MC |
| SRR4947508 | root | Al | 3.41 | MC |
| SRR4947509 | root | Al | 3.59 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.22 | MC |
| SRR6502094 | root | control | 4.80 | MC |
| SRR6502095 | root | control | 3.82 | MC |
| SRR6502096 | root | control | 3.90 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.63 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.27 | MC |
| SRR2154086 | seedling | wt | 4.31 | MC |
| SRR2154082 | seedling | wt | 2.46 | MC |
| SRR2154083 | seedling | wt | 3.43 | MC |
| SRR2154084 | seedling | wt | 3.18 | MC |
| SRR2154085 | seedling | wt | 3.63 | MC |
| SRR2154087 | seedling | wt | 2.15 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.46 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.56 | MC |
| SRR1944583 | seedling | no_treatment | 3.61 | MC |
| SRR358793 | seedling | wt | 4.33 | MC |
| SRR358794 | seedling | wt | 2.36 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.41 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.68 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.76 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.81 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.38 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.37 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.91 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 3.08 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.53 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.09 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.47 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.71 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.96 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.26 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.55 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.70 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 6.17 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.45 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 6.87 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 9.62 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 7.50 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.26 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.03 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.34 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.81 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 6.61 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.08 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 8.11 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 7.66 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 8.78 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.48 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 6.80 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 8.19 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.01 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 7.24 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 7.53 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.02 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.26 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.92 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.23 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.04 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.24 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.90 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.77 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.89 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.56 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.14 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.54 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.39 | MC |