| SRR4457249 | 2nd_leaf | DAH4 | 1.02 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.81 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.53 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.61 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.67 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.57 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.58 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.55 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.83 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.26 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.78 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.95 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.30 | MC |
| SRR5560729 | caryopsis | wild_type | 2.02 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.77 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.97 | MC |
| SRR7265410 | coleoptile | 3dN | 3.64 | MC |
| SRR7265416 | coleoptile | 4dN | 3.10 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.07 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.94 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.31 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.59 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.17 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.57 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.17 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.30 | MC |
| SRR7265382 | embryo | 3hA | 3.78 | MC |
| SRR7265387 | embryo | 3hN | 2.71 | MC |
| SRR7265391 | embryo | 12hN | 2.08 | MC |
| SRR7265393 | embryo | 12hN | 1.70 | MC |
| SRR7265398 | embryo | 24hN | 2.53 | MC |
| SRR2338867 | endosprem | control | 1.10 | MC |
| SRR2338869 | endosprem | high_temperature | 0.58 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.30 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.60 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.37 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.30 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.46 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.75 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.60 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.50 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.22 | MC |
| SRR1213691 | flower | wt | 0.90 | MC |
| SRR8060836 | leaf | wild_type | 2.25 | MC |
| SRR8060837 | leaf | wild_type | 0.86 | MC |
| SRR8240825 | leaf | wild_type | 1.12 | MC |
| SRR8240826 | leaf | wild_type | 0.93 | MC |
| SRR8240819 | leaf | wild_type | 1.14 | MC |
| SRR8240820 | leaf | wild_type | 2.07 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.68 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.08 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.65 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.82 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.65 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.86 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.18 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.74 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.62 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.10 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.75 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.98 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.10 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.54 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.32 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.65 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.45 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.17 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.80 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.99 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.63 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.62 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.97 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.80 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.36 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.66 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.77 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.35 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.34 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.64 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.35 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.34 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.64 | MC |
| SRR1761528 | leaf | drought | 1.35 | MC |
| SRR1761529 | leaf | drought | 1.34 | MC |
| SRR1761531 | leaf | control | 0.64 | MC |
| SRR504365 | leaf | wt | 1.10 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.02 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.43 | MC |
| SRR6417967 | leaf | H2O_control | 1.14 | MC |
| SRR6417968 | leaf | H2O_control | 1.34 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.63 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.31 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.93 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.84 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.12 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.62 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.36 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.74 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.70 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.10 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.51 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.41 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.02 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.09 | MC |
| SRR1213692 | leaf | wt | 0.32 | MC |
| SRR1213693 | leaf | wt | 0.37 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.59 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.02 | MC |
| SRR6502088 | leaf | control | 1.40 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.14 | MC |
| SRR6502100 | leaf | control | 1.02 | MC |
| SRR6502101 | leaf | control | 1.10 | MC |
| SRR6502102 | leaf | control | 2.85 | MC |
| SRR5856927 | leaf | control | 1.31 | MC |
| SRR5856928 | leaf | control | 1.17 | MC |
| SRR5856929 | leaf | control | 1.37 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 10.56 | MC |
| SRR6168973 | leaf | none (control) | 1.80 | MC |
| SRR6168975 | leaf | none (control) | 2.14 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.31 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.82 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.11 | MC |
| SRR8582888 | panicle | AM | 0.83 | MC |
| SRR8582890 | panicle | AM | 0.93 | MC |
| SRR8582891 | panicle | PM | 0.45 | MC |
| SRR8582893 | panicle | PM | 3.73 | MC |
| SRR5110432 | panicle | Dawn | 1.18 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.51 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.84 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.82 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.51 | MC |
| SRR5110445 | panicle | Dusk | 2.91 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.23 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.30 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.90 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.78 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.51 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.96 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.03 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.55 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.31 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.02 | MC |
| SRR5126147 | root | "mock,1_day" | 3.35 | MC |
| SRR5126148 | root | "mock,1_day" | 2.10 | MC |
| SRR5126149 | root | "mock,1_day" | 3.98 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.97 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.20 | MC |
| SRR5126153 | root | "mock,7_days" | 2.62 | MC |
| SRR5126155 | root | "mock,7_days" | 3.82 | MC |
| SRR5126157 | root | "mock,7_days" | 3.15 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.26 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.51 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.73 | MC |
| SRR5126167 | root | "mock,14_days" | 1.15 | MC |
| SRR5126169 | root | "mock,14_days" | 1.82 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.34 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.14 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.10 | MC |
| SRR1213695 | root | wt | 0.76 | MC |
| SRR4947478 | root | control | 4.17 | MC |
| SRR4947493 | root | Al | 0.97 | MC |
| SRR4947509 | root | Al | 4.90 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.73 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.48 | MC |
| SRR6502095 | root | control | 2.78 | MC |
| SRR6502096 | root | control | 2.27 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.06 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.63 | MC |
| SRR6502107 | root | control | 2.20 | MC |
| SRR1740433 | root_elongation_zone | wt | 3.24 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.84 | MC |
| SRR6441554 | seedling | wild_type | 0.81 | MC |
| SRR2154086 | seedling | wt | 3.90 | MC |
| SRR2154082 | seedling | wt | 2.07 | MC |
| SRR2154083 | seedling | wt | 1.53 | MC |
| SRR2154087 | seedling | wt | 1.62 | MC |
| SRR3098741 | seedling | wt | 0.65 | MC |
| SRR3098742 | seedling | wt | 0.39 | MC |
| SRR3098743 | seedling | wt | 0.45 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.22 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.91 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.23 | MC |
| SRR1944583 | seedling | no_treatment | 3.13 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.33 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.41 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.85 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.45 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.55 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.26 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.11 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.26 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.25 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.06 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.73 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.23 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.34 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.52 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.64 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.59 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 6.87 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 5.03 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.47 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.76 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.01 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.01 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.36 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.81 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.36 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.84 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.84 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.29 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.81 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.04 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.00 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.82 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.41 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.19 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.90 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.78 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.50 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.07 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.73 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.22 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.02 | MC |