| SRR358795 | callus | wt | 2.48 | MC |
| SRR358796 | callus | wt | 3.27 | MC |
| SRR358797 | callus | wt | 2.20 | MC |
| SRR358798 | callus | wt | 4.48 | MC |
| SRR5560727 | caryopsis | wild_type | 1.43 | MC |
| SRR5560728 | caryopsis | wild_type | 1.62 | MC |
| SRR5560729 | caryopsis | wild_type | 1.61 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.80 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.41 | MC |
| SRR7265400 | coleoptile | 2dA | 0.40 | MC |
| SRR7265401 | coleoptile | 2dA | 0.86 | MC |
| SRR7265402 | coleoptile | 2dA | 0.34 | MC |
| SRR7265403 | coleoptile | 2dN | 0.96 | MC |
| SRR7265404 | coleoptile | 2dN | 0.45 | MC |
| SRR7265405 | coleoptile | 2dN | 0.86 | MC |
| SRR7265406 | coleoptile | 3dA | 0.37 | MC |
| SRR7265407 | coleoptile | 3dA | 0.49 | MC |
| SRR7265409 | coleoptile | 3dN | 0.37 | MC |
| SRR7265411 | coleoptile | 3dN | 0.34 | MC |
| SRR7265412 | coleoptile | 4dA | 0.47 | MC |
| SRR7265416 | coleoptile | 4dN | 0.65 | MC |
| SRR7265417 | coleoptile | 4dN | 1.12 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.78 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.48 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.65 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.02 | MC |
| SRR7265376 | embryo | 1hA | 1.45 | MC |
| SRR7265377 | embryo | 1hA | 1.16 | MC |
| SRR7265378 | embryo | 1hA | 1.46 | MC |
| SRR7265379 | embryo | 1hN | 0.79 | MC |
| SRR7265380 | embryo | 1hN | 1.99 | MC |
| SRR7265381 | embryo | 1hN | 1.52 | MC |
| SRR7265382 | embryo | 3hA | 2.42 | MC |
| SRR7265383 | embryo | 3hA | 2.45 | MC |
| SRR7265384 | embryo | 3hA | 2.84 | MC |
| SRR7265385 | embryo | 3hN | 3.31 | MC |
| SRR7265386 | embryo | 3hN | 1.79 | MC |
| SRR7265387 | embryo | 3hN | 2.04 | MC |
| SRR7265388 | embryo | 12hA | 1.07 | MC |
| SRR7265389 | embryo | 12hA | 0.53 | MC |
| SRR7265390 | embryo | 12hA | 0.73 | MC |
| SRR7265391 | embryo | 12hN | 0.58 | MC |
| SRR7265392 | embryo | 12hN | 0.92 | MC |
| SRR7265393 | embryo | 12hN | 1.15 | MC |
| SRR7265395 | embryo | 24hA | 0.72 | MC |
| SRR7265397 | embryo | 24hN | 0.75 | MC |
| SRR976168 | flag_leaf | wild_type | 0.61 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.13 | MC |
| SRR1213691 | flower | wt | 1.09 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.45 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.29 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.40 | MC |
| SRR1633182 | panicle | WT | 4.48 | MC |
| SRR1633185 | panicle | WT | 4.84 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.10 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.16 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.86 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.64 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.24 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.44 | MC |
| SRR5126147 | root | "mock,1_day" | 0.36 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.54 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.62 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.89 | MC |
| SRR5126153 | root | "mock,7_days" | 0.32 | MC |
| SRR5126157 | root | "mock,7_days" | 0.70 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.71 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.17 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.08 | MC |
| SRR5126167 | root | "mock,14_days" | 0.60 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.86 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.20 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.89 | MC |
| SRR4947484 | root | Al | 0.62 | MC |
| SRR4947485 | root | Al | 0.69 | MC |
| SRR4947489 | root | control | 0.56 | MC |
| SRR4947493 | root | Al | 0.54 | MC |
| SRR4947501 | root | Al | 0.83 | MC |
| SRR4947509 | root | Al | 0.51 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.52 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.44 | MC |
| SRR6502094 | root | control | 0.44 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.52 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.79 | MC |
| SRR6502107 | root | control | 0.29 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.32 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.28 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.19 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.49 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.55 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.85 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.98 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.98 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.64 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.44 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.30 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.00 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.91 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.97 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.70 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.37 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.89 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.35 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.97 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 7.03 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 5.12 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.55 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 5.45 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.11 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 5.29 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.84 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.75 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.03 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.26 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.67 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 5.59 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 7.18 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.63 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.90 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 6.06 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.92 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.24 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 7.04 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.79 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.90 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.85 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.48 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.48 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.11 | MC |