| SRR4457249 | 2nd_leaf | DAH4 | 4.96 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 4.37 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 5.01 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.13 | MC |
| SRR3745125 | anther | wt | 2.85 | MC |
| SRR3745126 | anther | wt | 3.15 | MC |
| SRR3745127 | anther | wt | 4.04 | MC |
| SRR5560727 | caryopsis | wild_type | 4.97 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.38 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.95 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.49 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.68 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.65 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.45 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.10 | MC |
| SRR2338866 | endosprem | control | 3.74 | MC |
| SRR2338868 | endosprem | high_temperature | 1.41 | MC |
| SRR2338869 | endosprem | high_temperature | 2.52 | MC |
| SRR1213691 | flower | wt | 3.57 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.68 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.36 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.32 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.96 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.49 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.72 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.84 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.21 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.04 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.82 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 6.29 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.55 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.26 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.99 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.51 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.67 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.12 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.04 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.45 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.92 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.18 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.18 | MC |
| SRR1761530 | leaf | control | 5.18 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.12 | MC |
| SRR6417967 | leaf | H2O_control | 3.33 | MC |
| SRR6417968 | leaf | H2O_control | 2.05 | MC |
| SRR6417969 | leaf | H2O_control | 2.73 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.20 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.40 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.04 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.06 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.83 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.22 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.75 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.85 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 5.34 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.01 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.38 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 7.67 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 7.03 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.20 | MC |
| SRR6168973 | leaf | none (control) | 1.07 | MC |
| SRR6168974 | leaf | none (control) | 1.97 | MC |
| SRR6168975 | leaf | none (control) | 2.85 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.76 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.85 | MC |
| SRR6168981 | leaf | none (control) | 2.30 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.87 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.69 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.41 | MC |
| SRR8582888 | panicle | AM | 3.14 | MC |
| SRR8582889 | panicle | AM | 1.65 | MC |
| SRR8582890 | panicle | AM | 2.40 | MC |
| SRR8582891 | panicle | PM | 1.23 | MC |
| SRR8582892 | panicle | PM | 1.36 | MC |
| SRR8582893 | panicle | PM | 0.97 | MC |
| SRR4947496 | root | control | 4.27 | MC |
| SRR5110437 | panicle | Dawn + 7h | 4.08 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.71 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.27 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.40 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.61 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.59 | MC |
| SRR5110446 | panicle | Dusk | 3.25 | MC |
| SRR5110447 | panicle | Dusk | 2.97 | MC |
| SRR5110448 | panicle | Dusk | 4.90 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.46 | MC |
| SRR5110452 | panicle | Dawn + 14h | 4.32 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.52 | MC |
| SRR5110457 | panicle | Dawn + 21h | 3.22 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.60 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.92 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.38 | MC |
| SRR4947479 | root | control | 4.51 | MC |
| SRR4947482 | root | Al | 2.84 | MC |
| SRR4947489 | root | control | 2.56 | MC |
| SRR4947491 | root | Al | 4.84 | MC |
| SRR4947492 | root | Al | 5.06 | MC |
| SRR4947493 | root | Al | 4.58 | MC |
| SRR4947497 | root | control | 3.62 | MC |
| SRR4947500 | root | Al | 5.41 | MC |
| SRR4947501 | root | Al | 3.37 | MC |
| SRR4947502 | root | control | 4.38 | MC |
| SRR4947505 | root | control | 5.07 | MC |
| SRR4947507 | root | Al | 5.60 | MC |
| SRR4947508 | root | Al | 4.04 | MC |
| SRR4947509 | root | Al | 3.66 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.15 | MC |
| SRR6502095 | root | control | 4.86 | MC |
| SRR1740432 | root_elongation_zone | wt | 3.21 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.28 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.04 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.80 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.68 | MC |
| SRR2154086 | seedling | wt | 3.67 | MC |
| SRR2154087 | seedling | wt | 1.82 | MC |
| SRR1944583 | seedling | no_treatment | 1.77 | MC |
| SRR358791 | seedling | wt | 6.68 | MC |
| SRR358792 | seedling | wt | 5.03 | MC |
| SRR358793 | seedling | wt | 1.42 | MC |
| SRR358794 | seedling | wt | 1.79 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.69 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.88 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.56 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.99 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.00 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.17 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.06 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.34 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.29 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.70 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.47 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.67 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.71 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.72 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.94 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.18 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.05 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.08 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.11 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.63 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.31 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.44 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.88 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.30 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.66 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.91 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.22 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.92 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.57 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.57 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.66 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.74 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.75 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.58 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.88 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.92 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.12 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.00 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 7.45 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.18 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.77 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.80 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.02 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.02 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.18 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.70 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.47 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.99 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.24 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.62 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.00 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.42 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.28 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.32 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.24 | MC |