| SRR5560727 | caryopsis | wild_type | 0.61 | MC |
| SRR5560728 | caryopsis | wild_type | 1.98 | MC |
| SRR5560729 | caryopsis | wild_type | 0.77 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.03 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.45 | MC |
| SRR7265401 | coleoptile | 2dA | 0.53 | MC |
| SRR7265406 | coleoptile | 3dA | 0.36 | MC |
| SRR7265412 | coleoptile | 4dA | 0.51 | MC |
| SRR7265413 | coleoptile | 4dA | 0.97 | MC |
| SRR7265414 | coleoptile | 4dA | 0.83 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.63 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.81 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.53 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.27 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.64 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.90 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.01 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.48 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.14 | MC |
| SRR2338868 | endosprem | high_temperature | 2.10 | MC |
| SRR8240824 | leaf | wild_type | 1.15 | MC |
| SRR8240825 | leaf | wild_type | 0.67 | MC |
| SRR8240820 | leaf | wild_type | 1.54 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.61 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.44 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.52 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.02 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.16 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.64 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.68 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.99 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.28 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.60 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.31 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.34 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.80 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.49 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.48 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.27 | MC |
| SRR5856927 | leaf | control | 0.61 | MC |
| SRR5856928 | leaf | control | 0.27 | MC |
| SRR5856930 | leaf | salt | 0.42 | MC |
| SRR5856931 | leaf | salt | 0.18 | MC |
| SRR5856934 | leaf | control | 1.87 | MC |
| SRR5856937 | leaf | salt | 0.71 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 5.08 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.40 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.67 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.56 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.77 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.36 | MC |
| SRR5126147 | root | "mock,1_day" | 0.51 | MC |
| SRR5126148 | root | "mock,1_day" | 1.21 | MC |
| SRR5126149 | root | "mock,1_day" | 1.99 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.50 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.82 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.16 | MC |
| SRR5126153 | root | "mock,7_days" | 1.19 | MC |
| SRR5126155 | root | "mock,7_days" | 1.34 | MC |
| SRR5126157 | root | "mock,7_days" | 1.17 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.64 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.76 | MC |
| SRR5126165 | root | "mock,14_days" | 4.35 | MC |
| SRR5126167 | root | "mock,14_days" | 0.49 | MC |
| SRR5126169 | root | "mock,14_days" | 1.69 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.99 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.72 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.12 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.38 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.84 | MC |
| SRR1213694 | root | wt | 1.49 | MC |
| SRR4947479 | root | control | 1.21 | MC |
| SRR4947480 | root | control | 2.18 | MC |
| SRR4947481 | root | control | 1.88 | MC |
| SRR4947485 | root | Al | 1.63 | MC |
| SRR4947488 | root | control | 1.25 | MC |
| SRR4947489 | root | control | 1.35 | MC |
| SRR4947490 | root | Al | 0.85 | MC |
| SRR4947497 | root | control | 1.89 | MC |
| SRR4947500 | root | Al | 1.78 | MC |
| SRR4947501 | root | Al | 1.70 | MC |
| SRR4947504 | root | control | 1.23 | MC |
| SRR4947508 | root | Al | 1.46 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.04 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.15 | MC |
| SRR6502094 | root | control | 1.24 | MC |
| SRR6502095 | root | control | 0.60 | MC |
| SRR6502096 | root | control | 1.43 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.77 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.73 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.14 | MC |
| SRR6502106 | root | control | 2.15 | MC |
| SRR6502107 | root | control | 2.84 | MC |
| SRR6502108 | root | control | 0.95 | MC |
| SRR2154086 | seedling | wt | 0.90 | MC |
| SRR2154083 | seedling | wt | 0.85 | MC |
| SRR2154084 | seedling | wt | 0.44 | MC |
| SRR2154087 | seedling | wt | 1.31 | MC |
| SRR3098741 | seedling | wt | 0.35 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.49 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.45 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.52 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.36 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.59 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.25 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.45 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.10 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.19 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.90 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.72 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.12 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.79 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.37 | MC |