| SRR4457260 | 2nd_leaf | DAH28 | 0.29 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.74 | MC |
| SRR5560729 | caryopsis | wild_type | 0.57 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.36 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.99 | MC |
| SRR7265400 | coleoptile | 2dA | 1.05 | MC |
| SRR7265401 | coleoptile | 2dA | 1.14 | MC |
| SRR7265402 | coleoptile | 2dA | 2.01 | MC |
| SRR7265413 | coleoptile | 4dA | 0.72 | MC |
| SRR7265414 | coleoptile | 4dA | 0.59 | MC |
| SRR7265416 | coleoptile | 4dN | 0.54 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.88 | MC |
| SRR7265391 | embryo | 12hN | 0.48 | MC |
| SRR7265393 | embryo | 12hN | 0.52 | MC |
| SRR2338867 | endosprem | control | 0.58 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.58 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.30 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.40 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.13 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.23 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.46 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.70 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.33 | MC |
| SRR1213691 | flower | wt | 1.08 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.53 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.84 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.18 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.37 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.38 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.46 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.07 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.45 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.43 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.08 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.31 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.11 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.36 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.64 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.96 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.27 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.89 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.54 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.04 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.22 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.55 | MC |
| SRR504365 | leaf | wt | 1.14 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.60 | MC |
| SRR6417968 | leaf | H2O_control | 0.43 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.48 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.35 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.59 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.87 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.18 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.66 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.67 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.00 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.19 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.75 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.35 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.32 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.33 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.20 | MC |
| SRR1213692 | leaf | wt | 0.36 | MC |
| SRR1213693 | leaf | wt | 0.36 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.82 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.26 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.33 | MC |
| SRR6168973 | leaf | none (control) | 0.59 | MC |
| SRR6168974 | leaf | none (control) | 0.66 | MC |
| SRR6168975 | leaf | none (control) | 0.46 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.77 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.30 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.21 | MC |
| SRR8582888 | panicle | AM | 0.41 | MC |
| SRR8582889 | panicle | AM | 0.19 | MC |
| SRR8582890 | panicle | AM | 0.31 | MC |
| SRR8582893 | panicle | PM | 0.28 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.09 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.72 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.46 | MC |
| SRR5110445 | panicle | Dusk | 0.59 | MC |
| SRR5110446 | panicle | Dusk | 0.65 | MC |
| SRR5110447 | panicle | Dusk | 0.42 | MC |
| SRR5110448 | panicle | Dusk | 0.61 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.02 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.82 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.60 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.66 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.25 | MC |
| SRR1633185 | panicle | WT | 1.00 | MC |
| SRR1213694 | root | wt | 1.12 | MC |
| SRR1213695 | root | wt | 0.67 | MC |
| SRR4947478 | root | control | 1.64 | MC |
| SRR4947479 | root | control | 1.53 | MC |
| SRR4947480 | root | control | 2.06 | MC |
| SRR4947481 | root | control | 3.26 | MC |
| SRR4947484 | root | Al | 0.65 | MC |
| SRR4947485 | root | Al | 0.60 | MC |
| SRR4947492 | root | Al | 0.77 | MC |
| SRR4947500 | root | Al | 0.68 | MC |
| SRR4947501 | root | Al | 0.50 | MC |
| SRR4947503 | root | control | 1.13 | MC |
| SRR4947504 | root | control | 1.02 | MC |
| SRR4947506 | root | Al | 2.40 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.93 | MC |
| SRR2154086 | seedling | wt | 0.54 | MC |
| SRR3098743 | seedling | wt | 0.16 | MC |
| SRR1944583 | seedling | no_treatment | 1.49 | MC |
| SRR358791 | seedling | wt | 3.87 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.70 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.84 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.31 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.63 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.47 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.50 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.60 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.45 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.60 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.56 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.33 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.30 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.75 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.98 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.15 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.20 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.65 | MC |