| SRR4457250 | 2nd_leaf | DAH4 | 0.48 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.24 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.49 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.71 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.40 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.53 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.63 | MC |
| SRR358797 | callus | wt | 3.45 | MC |
| SRR5560727 | caryopsis | wild_type | 0.42 | MC |
| SRR5560728 | caryopsis | wild_type | 0.44 | MC |
| SRR5560729 | caryopsis | wild_type | 0.59 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.63 | MC |
| SRR4947495 | root | control | 0.75 | MC |
| SRR7265400 | coleoptile | 2dA | 2.21 | MC |
| SRR7265401 | coleoptile | 2dA | 2.41 | MC |
| SRR7265402 | coleoptile | 2dA | 1.78 | MC |
| SRR7265403 | coleoptile | 2dN | 1.94 | MC |
| SRR7265404 | coleoptile | 2dN | 1.62 | MC |
| SRR7265405 | coleoptile | 2dN | 2.87 | MC |
| SRR7265406 | coleoptile | 3dA | 1.07 | MC |
| SRR7265407 | coleoptile | 3dA | 1.01 | MC |
| SRR7265408 | coleoptile | 3dA | 1.14 | MC |
| SRR7265409 | coleoptile | 3dN | 1.51 | MC |
| SRR7265410 | coleoptile | 3dN | 2.28 | MC |
| SRR7265411 | coleoptile | 3dN | 1.25 | MC |
| SRR7265412 | coleoptile | 4dA | 1.49 | MC |
| SRR7265413 | coleoptile | 4dA | 1.36 | MC |
| SRR7265414 | coleoptile | 4dA | 1.54 | MC |
| SRR7265415 | coleoptile | 4dN | 1.50 | MC |
| SRR7265416 | coleoptile | 4dN | 1.93 | MC |
| SRR7265417 | coleoptile | 4dN | 2.57 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.84 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.12 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.72 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.60 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.47 | MC |
| SRR7265376 | embryo | 1hA | 0.65 | MC |
| SRR7265377 | embryo | 1hA | 1.37 | MC |
| SRR7265378 | embryo | 1hA | 1.42 | MC |
| SRR7265379 | embryo | 1hN | 0.90 | MC |
| SRR7265381 | embryo | 1hN | 1.91 | MC |
| SRR7265382 | embryo | 3hA | 3.72 | MC |
| SRR7265383 | embryo | 3hA | 4.14 | MC |
| SRR7265384 | embryo | 3hA | 2.20 | MC |
| SRR7265385 | embryo | 3hN | 1.45 | MC |
| SRR7265386 | embryo | 3hN | 0.92 | MC |
| SRR7265387 | embryo | 3hN | 1.82 | MC |
| SRR7265388 | embryo | 12hA | 1.19 | MC |
| SRR7265389 | embryo | 12hA | 3.25 | MC |
| SRR7265390 | embryo | 12hA | 1.75 | MC |
| SRR7265391 | embryo | 12hN | 2.19 | MC |
| SRR7265392 | embryo | 12hN | 1.70 | MC |
| SRR7265393 | embryo | 12hN | 2.57 | MC |
| SRR7265394 | embryo | 24hA | 2.20 | MC |
| SRR7265395 | embryo | 24hA | 2.39 | MC |
| SRR7265396 | embryo | 24hA | 2.13 | MC |
| SRR7265397 | embryo | 24hN | 2.79 | MC |
| SRR7265398 | embryo | 24hN | 1.98 | MC |
| SRR7265399 | embryo | 24hN | 2.71 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.24 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.22 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.57 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.53 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.72 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.43 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.48 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.21 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.34 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.79 | MC |
| SRR1213691 | flower | wt | 0.67 | MC |
| SRR8060835 | leaf | wild_type | 0.73 | MC |
| SRR8060836 | leaf | wild_type | 0.25 | MC |
| SRR8060837 | leaf | wild_type | 0.34 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.48 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.78 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.86 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.44 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.07 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.71 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.63 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.93 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.62 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.84 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.76 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.43 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.56 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.25 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.17 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.81 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.73 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.40 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.53 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.66 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.17 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.73 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.46 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.73 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.46 | MC |
| SRR1761528 | leaf | drought | 0.73 | MC |
| SRR1761531 | leaf | control | 0.46 | MC |
| SRR504365 | leaf | wt | 0.74 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.27 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.59 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.93 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.57 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.55 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.31 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.59 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.72 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.87 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.44 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.26 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.42 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.79 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.79 | MC |
| SRR1213692 | leaf | wt | 1.92 | MC |
| SRR1213693 | leaf | wt | 0.62 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.68 | MC |
| SRR5856933 | leaf | control | 0.21 | MC |
| SRR5856937 | leaf | salt | 0.16 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.20 | MC |
| SRR8582889 | panicle | AM | 0.12 | MC |
| SRR8582891 | panicle | PM | 0.75 | MC |
| SRR8582893 | panicle | PM | 0.48 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.32 | MC |
| SRR5110448 | panicle | Dusk | 0.82 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.35 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.02 | MC |
| SRR1633182 | panicle | WT | 1.76 | MC |
| SRR1633185 | panicle | WT | 2.34 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.46 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.05 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.55 | MC |
| SRR5126153 | root | "mock,7_days" | 0.49 | MC |
| SRR5126155 | root | "mock,7_days" | 0.29 | MC |
| SRR5126157 | root | "mock,7_days" | 0.64 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.43 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.58 | MC |
| SRR5126165 | root | "mock,14_days" | 0.58 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.42 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.53 | MC |
| SRR1213695 | root | wt | 0.74 | MC |
| SRR4947482 | root | Al | 0.46 | MC |
| SRR4947484 | root | Al | 0.66 | MC |
| SRR4947506 | root | Al | 0.68 | MC |
| SRR4947507 | root | Al | 0.59 | MC |
| SRR4947509 | root | Al | 0.88 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.40 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.71 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.33 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.49 | MC |
| SRR6441554 | seedling | wild_type | 0.26 | MC |
| SRR2154086 | seedling | wt | 0.97 | MC |
| SRR2154083 | seedling | wt | 0.56 | MC |
| SRR2154084 | seedling | wt | 0.43 | MC |
| SRR2154085 | seedling | wt | 0.84 | MC |
| SRR2154087 | seedling | wt | 0.64 | MC |
| SRR3098742 | seedling | wt | 0.40 | MC |
| SRR3098743 | seedling | wt | 0.61 | MC |
| SRR358791 | seedling | wt | 1.26 | MC |
| SRR358792 | seedling | wt | 2.42 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.85 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.78 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.33 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.51 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.51 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.06 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.50 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.51 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.87 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.68 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.47 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.24 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.81 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.91 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.84 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.20 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.48 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.70 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.66 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.81 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.86 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.40 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.41 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.70 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.83 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.60 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.58 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.38 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.33 | MC |