| SRR4457251 | 2nd_leaf | DAH4 | 0.26 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.81 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.58 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.57 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.38 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.03 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.97 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.73 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.98 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.38 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.83 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.56 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.76 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.53 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 3.61 | MC |
| SRR6320473 | carpel | wt | 2.63 | MC |
| SRR5560727 | caryopsis | wild_type | 2.43 | MC |
| SRR5560729 | caryopsis | wild_type | 4.54 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.84 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.77 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.12 | MC |
| SRR7265408 | coleoptile | 3dA | 2.89 | MC |
| SRR7265412 | coleoptile | 4dA | 1.58 | MC |
| SRR7265414 | coleoptile | 4dA | 4.20 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.01 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.71 | MC |
| SRR7265380 | embryo | 1hN | 3.61 | MC |
| SRR7265385 | embryo | 3hN | 4.02 | MC |
| SRR2338866 | endosprem | control | 1.95 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.21 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.36 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.38 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.16 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.23 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.89 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.77 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.49 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.67 | MC |
| SRR8060835 | leaf | wild_type | 0.29 | MC |
| SRR8060836 | leaf | wild_type | 0.44 | MC |
| SRR8060837 | leaf | wild_type | 0.46 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.18 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.56 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.67 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.15 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.61 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.13 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.73 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.06 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.12 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.81 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.43 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.11 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.41 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.77 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.49 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.06 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.41 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.66 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.66 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.63 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.39 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.69 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.93 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.65 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.24 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.68 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.54 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.68 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.45 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.70 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.17 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.28 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.92 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.43 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.17 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.28 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.92 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.43 | MC |
| SRR1761528 | leaf | drought | 1.17 | MC |
| SRR1761529 | leaf | drought | 1.28 | MC |
| SRR1761530 | leaf | control | 0.92 | MC |
| SRR1761531 | leaf | control | 0.43 | MC |
| SRR504365 | leaf | wt | 1.51 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.68 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.58 | MC |
| SRR6417967 | leaf | H2O_control | 0.87 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.36 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.21 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.44 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.73 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.75 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 3.01 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.34 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.42 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.07 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.06 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.50 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.44 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.27 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.35 | MC |
| SRR1213692 | leaf | wt | 2.27 | MC |
| SRR1213693 | leaf | wt | 0.84 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.01 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.48 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.35 | MC |
| SRR6502088 | leaf | control | 1.51 | MC |
| SRR6502089 | leaf | control | 0.99 | MC |
| SRR6502090 | leaf | control | 0.94 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.03 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.95 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.90 | MC |
| SRR6502100 | leaf | control | 1.04 | MC |
| SRR6502101 | leaf | control | 0.63 | MC |
| SRR6502102 | leaf | control | 0.86 | MC |
| SRR5856930 | leaf | salt | 1.25 | MC |
| SRR5856937 | leaf | salt | 1.72 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.83 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.52 | MC |
| SRR6168973 | leaf | none (control) | 1.62 | MC |
| SRR6168974 | leaf | none (control) | 1.35 | MC |
| SRR6168975 | leaf | none (control) | 0.74 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 5.71 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.19 | MC |
| SRR8582891 | panicle | PM | 1.51 | MC |
| SRR8582892 | panicle | PM | 0.63 | MC |
| SRR8582893 | panicle | PM | 0.85 | MC |
| SRR5110430 | panicle | Dawn | 4.02 | MC |
| SRR4947496 | root | control | 4.63 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.41 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.89 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.29 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.99 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.51 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.79 | MC |
| SRR5110445 | panicle | Dusk | 2.84 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.44 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.19 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.19 | MC |
| SRR5126149 | root | "mock,1_day" | 4.21 | MC |
| SRR5126157 | root | "mock,7_days" | 2.07 | MC |
| SRR1213695 | root | wt | 0.74 | MC |
| SRR4947478 | root | control | 3.78 | MC |
| SRR4947480 | root | control | 5.11 | MC |
| SRR4947481 | root | control | 5.42 | MC |
| SRR4947483 | root | Al | 4.05 | MC |
| SRR4947484 | root | Al | 4.33 | MC |
| SRR4947485 | root | Al | 4.21 | MC |
| SRR4947489 | root | control | 4.45 | MC |
| SRR4947492 | root | Al | 3.50 | MC |
| SRR4947493 | root | Al | 3.81 | MC |
| SRR4947497 | root | control | 5.64 | MC |
| SRR1740433 | root_elongation_zone | wt | 3.12 | MC |
| SRR6441554 | seedling | wild_type | 1.35 | MC |
| SRR6441555 | seedling | wild_type | 1.43 | MC |
| SRR3098741 | seedling | wt | 1.39 | MC |
| SRR3098742 | seedling | wt | 1.88 | MC |
| SRR3098743 | seedling | wt | 1.10 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.56 | MC |
| SRR1944583 | seedling | no_treatment | 1.08 | MC |
| SRR358791 | seedling | wt | 3.22 | MC |
| SRR358792 | seedling | wt | 3.07 | MC |
| SRR358793 | seedling | wt | 1.08 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.42 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.70 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.80 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.57 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.39 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.89 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.62 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.67 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.61 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.60 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.99 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.09 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.86 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.92 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.23 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.41 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.39 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.94 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.04 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.41 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.36 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.16 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.49 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.93 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.28 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.13 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.68 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.81 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.84 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.43 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.24 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.67 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.97 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.96 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.04 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.47 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.59 | MC |