| SRR4457254 | 2nd_leaf | DAH12 | 0.27 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.40 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.86 | MC |
| SRR3745125 | anther | wt | 0.69 | MC |
| SRR5560727 | caryopsis | wild_type | 0.91 | MC |
| SRR5560728 | caryopsis | wild_type | 1.10 | MC |
| SRR5560729 | caryopsis | wild_type | 1.93 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.14 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.59 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.97 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.69 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.66 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.56 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.80 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.15 | MC |
| SRR2338868 | endosprem | high_temperature | 1.16 | MC |
| SRR2338869 | endosprem | high_temperature | 1.77 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.96 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.96 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.57 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.80 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.95 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.76 | MC |
| SRR8240824 | leaf | wild_type | 0.90 | MC |
| SRR8240825 | leaf | wild_type | 1.41 | MC |
| SRR8240826 | leaf | wild_type | 1.92 | MC |
| SRR8240819 | leaf | wild_type | 1.33 | MC |
| SRR8240820 | leaf | wild_type | 0.63 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.60 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.10 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.82 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.86 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.19 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.00 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.31 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.14 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.65 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.48 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.69 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.96 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.91 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.08 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.62 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.48 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.04 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.22 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.44 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.77 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.27 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.83 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.11 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.74 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.49 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.67 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.63 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.64 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.78 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.85 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.81 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.33 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.60 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.26 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.81 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.33 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.60 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.26 | MC |
| SRR1761528 | leaf | drought | 4.81 | MC |
| SRR1761529 | leaf | drought | 5.33 | MC |
| SRR1761530 | leaf | control | 5.60 | MC |
| SRR1761531 | leaf | control | 4.26 | MC |
| SRR504365 | leaf | wt | 0.24 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.61 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.22 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.45 | MC |
| SRR6417967 | leaf | H2O_control | 1.76 | MC |
| SRR6417968 | leaf | H2O_control | 1.78 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.01 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.10 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.13 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.30 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.30 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.75 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.48 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.47 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.21 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.22 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.27 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.58 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.53 | MC |
| SRR1213692 | leaf | wt | 1.09 | MC |
| SRR1213693 | leaf | wt | 0.48 | MC |
| SRR6502088 | leaf | control | 3.10 | MC |
| SRR6502089 | leaf | control | 3.77 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.30 | MC |
| SRR6502100 | leaf | control | 3.61 | MC |
| SRR6502101 | leaf | control | 4.05 | MC |
| SRR6502102 | leaf | control | 3.12 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.21 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.15 | MC |
| SRR6168981 | leaf | none (control) | 1.22 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.20 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.09 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.03 | MC |
| SRR8582888 | panicle | AM | 1.90 | MC |
| SRR8582890 | panicle | AM | 1.89 | MC |
| SRR8582891 | panicle | PM | 2.56 | MC |
| SRR8582893 | panicle | PM | 4.64 | MC |
| SRR4947496 | root | control | 1.39 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.41 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.45 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.98 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.07 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.59 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.65 | MC |
| SRR5126147 | root | "mock,1_day" | 1.01 | MC |
| SRR5126148 | root | "mock,1_day" | 0.73 | MC |
| SRR5126149 | root | "mock,1_day" | 0.82 | MC |
| SRR5126155 | root | "mock,7_days" | 0.59 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.74 | MC |
| SRR5126165 | root | "mock,14_days" | 0.70 | MC |
| SRR5126169 | root | "mock,14_days" | 0.30 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.46 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.28 | MC |
| SRR1213695 | root | wt | 0.42 | MC |
| SRR4947480 | root | control | 0.92 | MC |
| SRR4947481 | root | control | 0.75 | MC |
| SRR4947485 | root | Al | 1.27 | MC |
| SRR4947488 | root | control | 0.88 | MC |
| SRR4947489 | root | control | 1.33 | MC |
| SRR4947492 | root | Al | 0.87 | MC |
| SRR4947493 | root | Al | 0.94 | MC |
| SRR4947497 | root | control | 0.69 | MC |
| SRR4947500 | root | Al | 0.69 | MC |
| SRR4947501 | root | Al | 1.71 | MC |
| SRR4947504 | root | control | 1.83 | MC |
| SRR4947505 | root | control | 0.58 | MC |
| SRR4947508 | root | Al | 0.82 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.12 | MC |
| SRR6502094 | root | control | 0.44 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.21 | MC |
| SRR6502107 | root | control | 0.37 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.80 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.48 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.87 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.38 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.42 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.29 | MC |
| SRR2154086 | seedling | wt | 4.39 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.21 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.65 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.22 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.79 | MC |
| SRR358792 | seedling | wt | 1.70 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.35 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.66 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.42 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.41 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.10 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.41 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.92 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.86 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.63 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.50 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 4.38 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.43 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.35 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.78 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.59 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.97 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.07 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.87 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.82 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.98 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.01 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.16 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.57 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.24 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.15 | MC |