| SRR5560727 | caryopsis | wild_type | 0.24 | MC |
| SRR5560728 | caryopsis | wild_type | 0.49 | MC |
| SRR5560729 | caryopsis | wild_type | 0.62 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.64 | MC |
| SRR4947495 | root | control | 1.63 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.40 | MC |
| SRR7265406 | coleoptile | 3dA | 1.14 | MC |
| SRR7265407 | coleoptile | 3dA | 0.76 | MC |
| SRR7265408 | coleoptile | 3dA | 1.06 | MC |
| SRR7265412 | coleoptile | 4dA | 0.47 | MC |
| SRR7265413 | coleoptile | 4dA | 3.80 | MC |
| SRR7265414 | coleoptile | 4dA | 3.41 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.55 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.59 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.48 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.29 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.22 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.52 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.35 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.82 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.51 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.73 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 3.72 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.32 | MC |
| SRR7265378 | embryo | 1hA | 0.31 | MC |
| SRR7265380 | embryo | 1hN | 0.37 | MC |
| SRR7265381 | embryo | 1hN | 0.36 | MC |
| SRR7265382 | embryo | 3hA | 0.54 | MC |
| SRR7265383 | embryo | 3hA | 0.55 | MC |
| SRR7265384 | embryo | 3hA | 0.61 | MC |
| SRR7265387 | embryo | 3hN | 0.50 | MC |
| SRR7265394 | embryo | 24hA | 4.12 | MC |
| SRR2338867 | endosprem | control | 0.42 | MC |
| SRR976168 | flag_leaf | wild_type | 1.01 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.34 | MC |
| SRR1213691 | flower | wt | 1.76 | MC |
| SRR8240824 | leaf | wild_type | 0.48 | MC |
| SRR6502088 | leaf | control | 0.34 | MC |
| SRR6502100 | leaf | control | 0.34 | MC |
| SRR5856927 | leaf | control | 0.21 | MC |
| SRR5856928 | leaf | control | 0.34 | MC |
| SRR5856929 | leaf | control | 0.39 | MC |
| SRR5856931 | leaf | salt | 0.17 | MC |
| SRR5856933 | leaf | control | 0.49 | MC |
| SRR5856934 | leaf | control | 0.26 | MC |
| SRR5856935 | leaf | control | 0.40 | MC |
| SRR5856936 | leaf | salt | 0.16 | MC |
| SRR5856938 | leaf | salt | 0.24 | MC |
| SRR6168975 | leaf | none (control) | 3.49 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 5.51 | MC |
| SRR6168980 | leaf | none (control) | 0.32 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.82 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.48 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.00 | MC |
| SRR5110429 | panicle | Dawn | 4.77 | MC |
| SRR5110430 | panicle | Dawn | 2.84 | MC |
| SRR5110431 | panicle | Dawn | 2.93 | MC |
| SRR4947496 | root | control | 1.03 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.28 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.65 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.13 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 4.17 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.73 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.47 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.02 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.57 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.08 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.98 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.42 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.51 | MC |
| SRR5110445 | panicle | Dusk | 1.43 | MC |
| SRR5110446 | panicle | Dusk | 3.76 | MC |
| SRR5110448 | panicle | Dusk | 5.12 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.04 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.08 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.26 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.83 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.19 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.14 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.65 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.71 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.31 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.23 | MC |
| SRR5110459 | panicle | Dawn + 21h | 4.27 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.63 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.25 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.86 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.07 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.61 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.54 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.72 | MC |
| SRR5126147 | root | "mock,1_day" | 1.63 | MC |
| SRR5126148 | root | "mock,1_day" | 1.35 | MC |
| SRR5126149 | root | "mock,1_day" | 0.94 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.05 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.84 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.51 | MC |
| SRR5126153 | root | "mock,7_days" | 1.61 | MC |
| SRR5126155 | root | "mock,7_days" | 1.18 | MC |
| SRR5126157 | root | "mock,7_days" | 0.69 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.15 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.56 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.34 | MC |
| SRR5126165 | root | "mock,14_days" | 1.04 | MC |
| SRR5126167 | root | "mock,14_days" | 1.05 | MC |
| SRR5126169 | root | "mock,14_days" | 0.67 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.41 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.63 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.85 | MC |
| SRR4947478 | root | control | 1.45 | MC |
| SRR4947479 | root | control | 0.94 | MC |
| SRR4947480 | root | control | 1.78 | MC |
| SRR4947481 | root | control | 3.70 | MC |
| SRR4947482 | root | Al | 0.42 | MC |
| SRR4947483 | root | Al | 0.82 | MC |
| SRR4947484 | root | Al | 1.77 | MC |
| SRR4947485 | root | Al | 1.78 | MC |
| SRR4947487 | root | control | 1.18 | MC |
| SRR4947488 | root | control | 1.29 | MC |
| SRR4947489 | root | control | 1.32 | MC |
| SRR4947490 | root | Al | 1.53 | MC |
| SRR4947491 | root | Al | 2.87 | MC |
| SRR4947492 | root | Al | 1.10 | MC |
| SRR4947493 | root | Al | 1.54 | MC |
| SRR4947494 | root | control | 1.41 | MC |
| SRR4947497 | root | control | 1.80 | MC |
| SRR4947498 | root | Al | 2.27 | MC |
| SRR4947499 | root | Al | 2.17 | MC |
| SRR4947500 | root | Al | 1.95 | MC |
| SRR4947501 | root | Al | 3.07 | MC |
| SRR4947502 | root | control | 2.42 | MC |
| SRR4947503 | root | control | 1.25 | MC |
| SRR4947504 | root | control | 1.59 | MC |
| SRR4947505 | root | control | 2.26 | MC |
| SRR4947506 | root | Al | 0.91 | MC |
| SRR4947507 | root | Al | 2.08 | MC |
| SRR4947508 | root | Al | 0.83 | MC |
| SRR4947509 | root | Al | 2.29 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.19 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.58 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.50 | MC |
| SRR6502094 | root | control | 0.89 | MC |
| SRR6502095 | root | control | 1.18 | MC |
| SRR6502096 | root | control | 0.60 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.58 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.35 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.25 | MC |
| SRR6502106 | root | control | 0.98 | MC |
| SRR6502107 | root | control | 1.19 | MC |
| SRR6502108 | root | control | 1.53 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.89 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.97 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.59 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.41 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.85 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.62 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.01 | MC |
| SRR6441555 | seedling | wild_type | 0.61 | MC |
| SRR3098741 | seedling | wt | 0.58 | MC |
| SRR3098742 | seedling | wt | 2.57 | MC |
| SRR3098743 | seedling | wt | 1.53 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.03 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.86 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.03 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.78 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.06 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.76 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.54 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.38 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.88 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.21 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.05 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.74 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.19 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.25 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.61 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.79 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.39 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.31 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.04 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.07 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.22 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.93 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.17 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.32 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.05 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.86 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.87 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.24 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.36 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.05 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.96 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 10.15 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 14.75 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.34 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.80 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.46 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.05 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.60 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.51 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.17 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.39 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.84 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.92 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.59 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.70 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.12 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.92 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.57 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.77 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.56 | MC |