| SRR4457250 | 2nd_leaf | DAH4 | 0.66 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.16 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.03 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.17 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.34 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.70 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 4.57 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 4.53 | MC |
| SRR5560727 | caryopsis | wild_type | 3.93 | MC |
| SRR5560728 | caryopsis | wild_type | 1.21 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.48 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.74 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.93 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.55 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR7265393 | embryo | 12hN | 4.27 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.83 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.06 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.45 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.78 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.86 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.73 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.95 | MC |
| SRR4457248 | flag_leaf | DAH44 | 6.04 | MC |
| SRR8060836 | leaf | wild_type | 2.09 | MC |
| SRR8060837 | leaf | wild_type | 1.82 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.32 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.46 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.22 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.86 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.24 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.18 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.81 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.55 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.40 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.11 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.37 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.94 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.96 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.63 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.95 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.68 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.09 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.44 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.67 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.25 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.06 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.90 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.12 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.65 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.97 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.48 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.48 | MC |
| SRR1761529 | leaf | drought | 1.48 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.24 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.92 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.66 | MC |
| SRR6417968 | leaf | H2O_control | 0.62 | MC |
| SRR6417969 | leaf | H2O_control | 0.39 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.96 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.98 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.32 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.04 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.21 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.73 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.39 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.72 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.98 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.26 | MC |
| SRR6502088 | leaf | control | 3.45 | MC |
| SRR6502089 | leaf | control | 3.79 | MC |
| SRR6502101 | leaf | control | 4.13 | MC |
| SRR5856929 | leaf | control | 2.13 | MC |
| SRR5856931 | leaf | salt | 0.25 | MC |
| SRR5856935 | leaf | control | 2.07 | MC |
| SRR5856936 | leaf | salt | 0.41 | MC |
| SRR5856937 | leaf | salt | 0.72 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 6.63 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 10.24 | MC |
| SRR6168973 | leaf | none (control) | 0.32 | MC |
| SRR6168974 | leaf | none (control) | 1.67 | MC |
| SRR6168980 | leaf | none (control) | 1.16 | MC |
| SRR6168981 | leaf | none (control) | 2.34 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.28 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.10 | MC |
| SRR8582888 | panicle | AM | 1.33 | MC |
| SRR8582889 | panicle | AM | 0.88 | MC |
| SRR8582892 | panicle | PM | 3.55 | MC |
| SRR5110429 | panicle | Dawn | 2.81 | MC |
| SRR5110430 | panicle | Dawn | 2.06 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.47 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.38 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.15 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.52 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.90 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.85 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.22 | MC |
| SRR1633182 | panicle | WT | 4.37 | MC |
| SRR1633185 | panicle | WT | 4.80 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.28 | MC |
| SRR5126149 | root | "mock,1_day" | 3.38 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.39 | MC |
| SRR5126153 | root | "mock,7_days" | 2.64 | MC |
| SRR5126155 | root | "mock,7_days" | 1.46 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.51 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.14 | MC |
| SRR5126165 | root | "mock,14_days" | 1.50 | MC |
| SRR5126167 | root | "mock,14_days" | 1.95 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.13 | MC |
| SRR4947481 | root | control | 4.29 | MC |
| SRR4947491 | root | Al | 2.17 | MC |
| SRR4947506 | root | Al | 1.93 | MC |
| SRR4947508 | root | Al | 3.68 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.84 | MC |
| SRR6502108 | root | control | 1.45 | MC |
| SRR6441554 | seedling | wild_type | 0.40 | MC |
| SRR6441555 | seedling | wild_type | 1.18 | MC |
| SRR2154086 | seedling | wt | 1.92 | MC |
| SRR2154082 | seedling | wt | 2.06 | MC |
| SRR2154084 | seedling | wt | 2.84 | MC |
| SRR2154085 | seedling | wt | 3.14 | MC |
| SRR2154087 | seedling | wt | 2.64 | MC |
| SRR3098741 | seedling | wt | 1.50 | MC |
| SRR3098742 | seedling | wt | 0.72 | MC |
| SRR3098743 | seedling | wt | 0.73 | MC |
| SRR1944583 | seedling | no_treatment | 2.30 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.67 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.50 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.66 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.59 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.58 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.00 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.20 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.11 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.54 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.07 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.61 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.31 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 6.40 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.25 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.67 | MC |