| SRR4457250 | 2nd_leaf | DAH4 | 4.68 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.70 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.39 | MC |
| SRR358795 | callus | wt | 9.73 | MC |
| SRR358796 | callus | wt | 7.22 | MC |
| SRR358798 | callus | wt | 9.06 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.94 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.38 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.18 | MC |
| SRR7265400 | coleoptile | 2dA | 2.53 | MC |
| SRR7265401 | coleoptile | 2dA | 1.82 | MC |
| SRR7265402 | coleoptile | 2dA | 2.30 | MC |
| SRR7265403 | coleoptile | 2dN | 2.64 | MC |
| SRR7265404 | coleoptile | 2dN | 2.14 | MC |
| SRR7265405 | coleoptile | 2dN | 2.86 | MC |
| SRR7265406 | coleoptile | 3dA | 2.48 | MC |
| SRR7265407 | coleoptile | 3dA | 1.54 | MC |
| SRR7265408 | coleoptile | 3dA | 1.15 | MC |
| SRR7265409 | coleoptile | 3dN | 1.60 | MC |
| SRR7265410 | coleoptile | 3dN | 1.43 | MC |
| SRR7265411 | coleoptile | 3dN | 1.25 | MC |
| SRR7265412 | coleoptile | 4dA | 3.00 | MC |
| SRR7265413 | coleoptile | 4dA | 3.64 | MC |
| SRR7265414 | coleoptile | 4dA | 3.36 | MC |
| SRR7265415 | coleoptile | 4dN | 0.90 | MC |
| SRR7265416 | coleoptile | 4dN | 1.62 | MC |
| SRR7265417 | coleoptile | 4dN | 1.70 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.03 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.40 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.89 | MC |
| SRR7265374 | embryo | dry seed 0 h | 4.18 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.51 | MC |
| SRR7265376 | embryo | 1hA | 2.32 | MC |
| SRR7265382 | embryo | 3hA | 4.37 | MC |
| SRR7265383 | embryo | 3hA | 4.02 | MC |
| SRR7265384 | embryo | 3hA | 3.99 | MC |
| SRR7265385 | embryo | 3hN | 1.90 | MC |
| SRR7265386 | embryo | 3hN | 2.16 | MC |
| SRR7265387 | embryo | 3hN | 2.04 | MC |
| SRR7265388 | embryo | 12hA | 3.35 | MC |
| SRR7265389 | embryo | 12hA | 3.09 | MC |
| SRR7265390 | embryo | 12hA | 4.27 | MC |
| SRR7265392 | embryo | 12hN | 4.38 | MC |
| SRR7265395 | embryo | 24hA | 4.52 | MC |
| SRR7265396 | embryo | 24hA | 2.85 | MC |
| SRR7265397 | embryo | 24hN | 3.82 | MC |
| SRR7265398 | embryo | 24hN | 3.73 | MC |
| SRR7265399 | embryo | 24hN | 2.08 | MC |
| SRR2338867 | endosprem | control | 1.22 | MC |
| SRR2338868 | endosprem | high_temperature | 1.05 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.77 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.63 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.35 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.30 | MC |
| SRR4457246 | flag_leaf | DAH44 | 4.10 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.63 | MC |
| SRR8240824 | leaf | wild_type | 0.50 | MC |
| SRR8240819 | leaf | wild_type | 0.92 | MC |
| SRR8240820 | leaf | wild_type | 1.06 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.30 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.89 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.95 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.53 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.07 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.20 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.11 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.64 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.48 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.73 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.82 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.89 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.03 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.17 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.03 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.17 | MC |
| SRR1761530 | leaf | control | 5.03 | MC |
| SRR1761531 | leaf | control | 5.17 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.90 | MC |
| SRR6417967 | leaf | H2O_control | 2.04 | MC |
| SRR6417968 | leaf | H2O_control | 1.41 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.10 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.43 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.90 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.69 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 4.02 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.79 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.97 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.49 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.92 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.23 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.25 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.74 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.38 | MC |
| SRR6502088 | leaf | control | 2.83 | MC |
| SRR6502089 | leaf | control | 2.13 | MC |
| SRR6502090 | leaf | control | 1.12 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.42 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.20 | MC |
| SRR6502100 | leaf | control | 2.15 | MC |
| SRR6502101 | leaf | control | 1.34 | MC |
| SRR6502102 | leaf | control | 2.88 | MC |
| SRR5856927 | leaf | control | 1.26 | MC |
| SRR5856928 | leaf | control | 2.11 | MC |
| SRR5856929 | leaf | control | 1.97 | MC |
| SRR5856930 | leaf | salt | 1.25 | MC |
| SRR5856931 | leaf | salt | 0.77 | MC |
| SRR5856932 | leaf | salt | 1.02 | MC |
| SRR5856936 | leaf | salt | 0.81 | MC |
| SRR5856937 | leaf | salt | 1.39 | MC |
| SRR5856938 | leaf | salt | 1.55 | MC |
| SRR6168979 | leaf | none (control) | 0.64 | MC |
| SRR6168980 | leaf | none (control) | 0.50 | MC |
| SRR6168981 | leaf | none (control) | 2.04 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.56 | MC |
| SRR8582888 | panicle | AM | 1.89 | MC |
| SRR8582889 | panicle | AM | 1.36 | MC |
| SRR8582890 | panicle | AM | 1.93 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.22 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.76 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.40 | MC |
| SRR1633182 | panicle | WT | 3.51 | MC |
| SRR5126148 | root | "mock,1_day" | 3.45 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.15 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.01 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 4.14 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.64 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.02 | MC |
| SRR5126167 | root | "mock,14_days" | 3.30 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.44 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.49 | MC |
| SRR4947478 | root | control | 2.67 | MC |
| SRR4947480 | root | control | 4.19 | MC |
| SRR4947487 | root | control | 3.93 | MC |
| SRR6502094 | root | control | 4.76 | MC |
| SRR6502095 | root | control | 3.56 | MC |
| SRR6502096 | root | control | 3.43 | MC |
| SRR6502106 | root | control | 4.27 | MC |
| SRR6502107 | root | control | 3.19 | MC |
| SRR6502108 | root | control | 3.93 | MC |
| SRR1740434 | root_differentiation_zone | wt | 3.30 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.28 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.65 | MC |
| SRR1740432 | root_elongation_zone | wt | 3.14 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.20 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.89 | MC |
| SRR6441555 | seedling | wild_type | 2.10 | MC |
| SRR3098741 | seedling | wt | 2.48 | MC |
| SRR3098742 | seedling | wt | 1.91 | MC |
| SRR3098743 | seedling | wt | 1.10 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.81 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.09 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.29 | MC |
| SRR1944583 | seedling | no_treatment | 2.04 | MC |
| SRR358792 | seedling | wt | 2.35 | MC |
| SRR358793 | seedling | wt | 1.84 | MC |
| SRR358794 | seedling | wt | 1.67 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.55 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.08 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.97 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.28 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.98 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.00 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.60 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.73 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.71 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.55 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.80 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.97 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.89 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.13 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.35 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.48 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.74 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.56 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.89 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.22 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.18 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.43 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.44 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.03 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.93 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.27 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.10 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.48 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.85 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.84 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.65 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 7.85 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 14.62 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 6.70 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.97 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 7.05 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.00 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 6.26 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 6.93 | MC |