| SRR358795 | callus | wt | 2.34 | MC |
| SRR358797 | callus | wt | 2.61 | MC |
| SRR6320498 | carpel | wt | 4.07 | MC |
| SRR5560728 | caryopsis | wild_type | 0.84 | MC |
| SRR5560729 | caryopsis | wild_type | 2.61 | MC |
| SRR4947495 | root | control | 0.54 | MC |
| SRR7265413 | coleoptile | 4dA | 3.77 | MC |
| SRR7265414 | coleoptile | 4dA | 2.43 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.24 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.28 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.97 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.16 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.70 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.34 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.85 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.69 | MC |
| SRR7265376 | embryo | 1hA | 2.55 | MC |
| SRR7265377 | embryo | 1hA | 1.57 | MC |
| SRR7265378 | embryo | 1hA | 1.70 | MC |
| SRR7265379 | embryo | 1hN | 1.78 | MC |
| SRR7265380 | embryo | 1hN | 1.94 | MC |
| SRR7265381 | embryo | 1hN | 1.88 | MC |
| SRR7265382 | embryo | 3hA | 1.85 | MC |
| SRR7265383 | embryo | 3hA | 2.03 | MC |
| SRR7265384 | embryo | 3hA | 2.62 | MC |
| SRR7265385 | embryo | 3hN | 1.14 | MC |
| SRR7265386 | embryo | 3hN | 1.75 | MC |
| SRR7265387 | embryo | 3hN | 1.57 | MC |
| SRR7265388 | embryo | 12hA | 3.75 | MC |
| SRR7265389 | embryo | 12hA | 4.57 | MC |
| SRR7265394 | embryo | 24hA | 4.56 | MC |
| SRR7265397 | embryo | 24hN | 3.91 | MC |
| SRR2338867 | endosprem | control | 0.51 | MC |
| SRR2338868 | endosprem | high_temperature | 0.81 | MC |
| SRR1213691 | flower | wt | 2.62 | MC |
| SRR6502088 | leaf | control | 1.47 | MC |
| SRR6502090 | leaf | control | 0.78 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502100 | leaf | control | 0.89 | MC |
| SRR6502101 | leaf | control | 0.80 | MC |
| SRR5856927 | leaf | control | 0.82 | MC |
| SRR5856928 | leaf | control | 1.18 | MC |
| SRR5856929 | leaf | control | 0.90 | MC |
| SRR5856930 | leaf | salt | 0.44 | MC |
| SRR5856932 | leaf | salt | 0.46 | MC |
| SRR5856933 | leaf | control | 1.42 | MC |
| SRR5856934 | leaf | control | 1.28 | MC |
| SRR5856935 | leaf | control | 1.11 | MC |
| SRR5856936 | leaf | salt | 0.28 | MC |
| SRR5856937 | leaf | salt | 0.14 | MC |
| SRR5856938 | leaf | salt | 0.46 | MC |
| SRR6168974 | leaf | none (control) | 2.49 | MC |
| SRR6168975 | leaf | none (control) | 2.41 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 6.57 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.73 | MC |
| SRR6168981 | leaf | none (control) | 1.07 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.18 | MC |
| SRR5110429 | panicle | Dawn | 4.30 | MC |
| SRR5110431 | panicle | Dawn | 1.91 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.58 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.91 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.54 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.93 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.12 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.00 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.51 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.55 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.75 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.91 | MC |
| SRR5110445 | panicle | Dusk | 1.31 | MC |
| SRR5110447 | panicle | Dusk | 1.95 | MC |
| SRR5110448 | panicle | Dusk | 3.37 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.63 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.39 | MC |
| SRR5110452 | panicle | Dawn + 14h | 4.83 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.80 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.62 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.03 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.76 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.11 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.69 | MC |
| SRR5126147 | root | "mock,1_day" | 3.26 | MC |
| SRR5126148 | root | "mock,1_day" | 3.14 | MC |
| SRR5126149 | root | "mock,1_day" | 1.44 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.13 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.15 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.47 | MC |
| SRR5126153 | root | "mock,7_days" | 3.81 | MC |
| SRR5126155 | root | "mock,7_days" | 4.10 | MC |
| SRR5126157 | root | "mock,7_days" | 2.25 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.69 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.96 | MC |
| SRR5126165 | root | "mock,14_days" | 0.75 | MC |
| SRR5126167 | root | "mock,14_days" | 2.21 | MC |
| SRR5126169 | root | "mock,14_days" | 3.00 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.01 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.03 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.73 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.94 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.81 | MC |
| SRR1213694 | root | wt | 0.30 | MC |
| SRR4947478 | root | control | 0.73 | MC |
| SRR4947479 | root | control | 1.15 | MC |
| SRR4947480 | root | control | 0.82 | MC |
| SRR4947481 | root | control | 0.52 | MC |
| SRR4947484 | root | Al | 1.07 | MC |
| SRR4947491 | root | Al | 0.55 | MC |
| SRR4947492 | root | Al | 1.03 | MC |
| SRR4947493 | root | Al | 0.79 | MC |
| SRR4947494 | root | control | 0.60 | MC |
| SRR4947498 | root | Al | 0.76 | MC |
| SRR4947499 | root | Al | 1.28 | MC |
| SRR4947500 | root | Al | 0.57 | MC |
| SRR4947502 | root | control | 1.24 | MC |
| SRR4947504 | root | control | 0.52 | MC |
| SRR4947508 | root | Al | 0.86 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.25 | MC |
| SRR6502094 | root | control | 3.54 | MC |
| SRR6502096 | root | control | 3.85 | MC |
| SRR6502103 | root | 100 mM NaCl | 5.29 | MC |
| SRR6502106 | root | control | 3.63 | MC |
| SRR6502107 | root | control | 2.39 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.77 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.93 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.87 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.98 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.41 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.11 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.07 | MC |
| SRR6441555 | seedling | wild_type | 1.28 | MC |
| SRR2154086 | seedling | wt | 3.42 | MC |
| SRR2154083 | seedling | wt | 2.70 | MC |
| SRR2154084 | seedling | wt | 2.32 | MC |
| SRR2154085 | seedling | wt | 1.94 | MC |
| SRR2154087 | seedling | wt | 2.31 | MC |
| SRR3098741 | seedling | wt | 0.31 | MC |
| SRR3098743 | seedling | wt | 2.59 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.01 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.75 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.53 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.01 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.75 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.39 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.12 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.93 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.35 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.19 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.09 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.14 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.62 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.78 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.06 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.66 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.11 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.26 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.55 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.06 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.74 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.01 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.96 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.88 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 8.15 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.24 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 7.16 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 7.00 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 6.31 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 5.27 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.27 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.09 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.36 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.56 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.29 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.65 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.80 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.33 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 5.20 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 11.16 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.62 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.52 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.77 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.70 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.65 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.87 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.48 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.70 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.50 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.62 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.91 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.43 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.07 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.73 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.64 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.87 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.91 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.39 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.26 | MC |