| SRR4457249 | 2nd_leaf | DAH4 | 1.10 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.23 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.53 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.81 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.57 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.43 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.78 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.65 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.90 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.30 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.35 | MC |
| SRR5560727 | caryopsis | wild_type | 0.81 | MC |
| SRR5560728 | caryopsis | wild_type | 1.46 | MC |
| SRR5560729 | caryopsis | wild_type | 0.97 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.51 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.06 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.07 | MC |
| SRR7265400 | coleoptile | 2dA | 3.32 | MC |
| SRR7265402 | coleoptile | 2dA | 3.32 | MC |
| SRR7265406 | coleoptile | 3dA | 3.43 | MC |
| SRR7265412 | coleoptile | 4dA | 3.30 | MC |
| SRR7265414 | coleoptile | 4dA | 3.45 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.72 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.07 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.36 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.21 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.64 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.98 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.54 | MC |
| SRR7265374 | embryo | dry seed 0 h | 4.07 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.03 | MC |
| SRR7265376 | embryo | 1hA | 3.04 | MC |
| SRR7265377 | embryo | 1hA | 2.62 | MC |
| SRR7265379 | embryo | 1hN | 2.94 | MC |
| SRR7265380 | embryo | 1hN | 1.86 | MC |
| SRR7265382 | embryo | 3hA | 1.99 | MC |
| SRR7265383 | embryo | 3hA | 1.90 | MC |
| SRR7265384 | embryo | 3hA | 2.72 | MC |
| SRR7265386 | embryo | 3hN | 2.29 | MC |
| SRR7265387 | embryo | 3hN | 1.51 | MC |
| SRR7265391 | embryo | 12hN | 4.57 | MC |
| SRR7265395 | embryo | 24hA | 4.21 | MC |
| SRR7265396 | embryo | 24hA | 4.81 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.63 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.41 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.78 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.49 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.70 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.31 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.77 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.53 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.79 | MC |
| SRR1213691 | flower | wt | 0.98 | MC |
| SRR8060837 | leaf | wild_type | 0.57 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.67 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.56 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.70 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.25 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.77 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.11 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.22 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.72 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.63 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.05 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.74 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.24 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.03 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.52 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.17 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.08 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.13 | MC |
| SRR504365 | leaf | wt | 1.12 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.78 | MC |
| SRR6417968 | leaf | H2O_control | 0.69 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.11 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.33 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.61 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.29 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.27 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.73 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.44 | MC |
| SRR1213692 | leaf | wt | 1.09 | MC |
| SRR1213693 | leaf | wt | 0.90 | MC |
| SRR5856928 | leaf | control | 0.73 | MC |
| SRR5856932 | leaf | salt | 0.34 | MC |
| SRR5856933 | leaf | control | 0.32 | MC |
| SRR5856935 | leaf | control | 0.48 | MC |
| SRR5856936 | leaf | salt | 0.51 | MC |
| SRR5856937 | leaf | salt | 0.46 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.66 | MC |
| SRR8582889 | panicle | AM | 0.21 | MC |
| SRR8582890 | panicle | AM | 0.48 | MC |
| SRR5110431 | panicle | Dawn | 0.80 | MC |
| SRR5110432 | panicle | Dawn | 1.96 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.10 | MC |
| SRR5110445 | panicle | Dusk | 1.05 | MC |
| SRR5110448 | panicle | Dusk | 1.53 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.18 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.73 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.89 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.71 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.47 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.32 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.38 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.02 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.38 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.74 | MC |
| SRR5126147 | root | "mock,1_day" | 1.17 | MC |
| SRR5126148 | root | "mock,1_day" | 1.70 | MC |
| SRR5126149 | root | "mock,1_day" | 1.45 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.90 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.95 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.53 | MC |
| SRR5126153 | root | "mock,7_days" | 1.43 | MC |
| SRR5126155 | root | "mock,7_days" | 1.24 | MC |
| SRR5126157 | root | "mock,7_days" | 0.44 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.32 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.29 | MC |
| SRR5126165 | root | "mock,14_days" | 2.83 | MC |
| SRR5126167 | root | "mock,14_days" | 1.46 | MC |
| SRR5126169 | root | "mock,14_days" | 1.73 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.62 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.04 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.62 | MC |
| SRR1213695 | root | wt | 0.96 | MC |
| SRR4947489 | root | control | 0.96 | MC |
| SRR4947500 | root | Al | 2.57 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.38 | MC |
| SRR6502096 | root | control | 0.90 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.30 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.21 | MC |
| SRR6441555 | seedling | wild_type | 0.36 | MC |
| SRR2154082 | seedling | wt | 0.68 | MC |
| SRR2154084 | seedling | wt | 1.62 | MC |
| SRR2154085 | seedling | wt | 1.23 | MC |
| SRR2154087 | seedling | wt | 1.33 | MC |
| SRR3098742 | seedling | wt | 0.45 | MC |
| SRR3098743 | seedling | wt | 0.48 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.89 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.86 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.75 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.25 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.69 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.87 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.15 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.70 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.09 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.43 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.30 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.56 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.88 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.76 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.85 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.44 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.30 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.68 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.55 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.37 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.13 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.57 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.79 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.36 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.54 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.72 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.68 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.75 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.02 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.57 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.67 | MC |