| SRR4457249 | 2nd_leaf | DAH4 | 0.56 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.04 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.34 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.49 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.53 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.66 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.84 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.53 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.59 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.08 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.50 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.95 | MC |
| SRR6320473 | carpel | wt | 4.39 | MC |
| SRR6320498 | carpel | wt | 2.15 | MC |
| SRR7265412 | coleoptile | 4dA | 2.65 | MC |
| SRR7265413 | coleoptile | 4dA | 5.01 | MC |
| SRR7265414 | coleoptile | 4dA | 3.64 | MC |
| SRR7265417 | coleoptile | 4dN | 3.23 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.77 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 4.20 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.49 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.79 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.69 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.46 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.55 | MC |
| SRR7265376 | embryo | 1hA | 2.47 | MC |
| SRR7265377 | embryo | 1hA | 1.50 | MC |
| SRR7265378 | embryo | 1hA | 2.32 | MC |
| SRR7265379 | embryo | 1hN | 2.32 | MC |
| SRR7265381 | embryo | 1hN | 1.68 | MC |
| SRR7265383 | embryo | 3hA | 3.05 | MC |
| SRR7265385 | embryo | 3hN | 2.14 | MC |
| SRR7265386 | embryo | 3hN | 2.32 | MC |
| SRR7265387 | embryo | 3hN | 1.03 | MC |
| SRR7265393 | embryo | 12hN | 4.54 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.77 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.30 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.31 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.29 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.55 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.50 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.64 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.76 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.20 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.28 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.13 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.63 | MC |
| SRR1213691 | flower | wt | 0.51 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.60 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.28 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.24 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.09 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.79 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.61 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.35 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.14 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.53 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.57 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.75 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.85 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.77 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.13 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.66 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.37 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.32 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.63 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.32 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.02 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.27 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.08 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.69 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.02 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.86 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.84 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.16 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.71 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.28 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.64 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.64 | MC |
| SRR1761528 | leaf | drought | 0.64 | MC |
| SRR504365 | leaf | wt | 2.19 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.37 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.30 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.52 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.45 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.53 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.71 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.89 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.82 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.53 | MC |
| SRR1213693 | leaf | wt | 0.25 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.84 | MC |
| SRR6502100 | leaf | control | 1.13 | MC |
| SRR5856927 | leaf | control | 0.20 | MC |
| SRR5856931 | leaf | salt | 0.31 | MC |
| SRR5856933 | leaf | control | 0.27 | MC |
| SRR5856935 | leaf | control | 0.25 | MC |
| SRR5856937 | leaf | salt | 0.18 | MC |
| SRR5856938 | leaf | salt | 0.22 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.30 | MC |
| SRR8582890 | panicle | AM | 0.41 | MC |
| SRR8582891 | panicle | PM | 1.27 | MC |
| SRR8582892 | panicle | PM | 1.20 | MC |
| SRR8582893 | panicle | PM | 0.65 | MC |
| SRR5110431 | panicle | Dawn | 0.91 | MC |
| SRR5110432 | panicle | Dawn | 0.66 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.47 | MC |
| SRR5110445 | panicle | Dusk | 0.76 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.21 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.67 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.55 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.64 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.74 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.82 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.82 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.21 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.26 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.41 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.35 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.88 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.92 | MC |
| SRR5126147 | root | "mock,1_day" | 0.35 | MC |
| SRR5126148 | root | "mock,1_day" | 0.77 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.92 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126155 | root | "mock,7_days" | 0.96 | MC |
| SRR5126157 | root | "mock,7_days" | 0.95 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.98 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.27 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.67 | MC |
| SRR5126165 | root | "mock,14_days" | 1.88 | MC |
| SRR5126169 | root | "mock,14_days" | 0.67 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.79 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.67 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.15 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR1213695 | root | wt | 0.29 | MC |
| SRR4947483 | root | Al | 1.03 | MC |
| SRR4947492 | root | Al | 1.16 | MC |
| SRR4947499 | root | Al | 0.48 | MC |
| SRR4947504 | root | control | 0.97 | MC |
| SRR4947508 | root | Al | 0.66 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.79 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.71 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.85 | MC |
| SRR6502107 | root | control | 1.12 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.31 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.54 | MC |
| SRR6441554 | seedling | wild_type | 0.29 | MC |
| SRR6441555 | seedling | wild_type | 0.29 | MC |
| SRR2154086 | seedling | wt | 0.43 | MC |
| SRR3098741 | seedling | wt | 0.37 | MC |
| SRR3098742 | seedling | wt | 0.27 | MC |
| SRR3098743 | seedling | wt | 0.20 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.77 | MC |
| SRR1944583 | seedling | no_treatment | 0.45 | MC |
| SRR358792 | seedling | wt | 1.25 | MC |
| SRR358793 | seedling | wt | 1.37 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.56 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.59 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.66 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.29 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.32 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.34 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.40 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.52 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.32 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.33 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.94 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.62 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.44 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.85 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.49 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.98 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.49 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.54 | MC |