| SRR4457251 | 2nd_leaf | DAH4 | 0.26 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.35 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.42 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.01 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.47 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.48 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.05 | MC |
| SRR7265401 | coleoptile | 2dA | 3.04 | MC |
| SRR7265403 | coleoptile | 2dN | 4.06 | MC |
| SRR7265404 | coleoptile | 2dN | 3.25 | MC |
| SRR7265405 | coleoptile | 2dN | 3.49 | MC |
| SRR7265411 | coleoptile | 3dN | 3.63 | MC |
| SRR7265415 | coleoptile | 4dN | 4.84 | MC |
| SRR7265416 | coleoptile | 4dN | 2.63 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.07 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.64 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.52 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.38 | MC |
| SRR7265374 | embryo | dry seed 0 h | 4.01 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.30 | MC |
| SRR7265379 | embryo | 1hN | 2.73 | MC |
| SRR7265381 | embryo | 1hN | 2.77 | MC |
| SRR7265391 | embryo | 12hN | 2.34 | MC |
| SRR7265392 | embryo | 12hN | 4.23 | MC |
| SRR7265393 | embryo | 12hN | 3.57 | MC |
| SRR7265395 | embryo | 24hA | 4.48 | MC |
| SRR7265396 | embryo | 24hA | 3.86 | MC |
| SRR7265398 | embryo | 24hN | 3.89 | MC |
| SRR2338869 | endosprem | high_temperature | 0.94 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.28 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.26 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.87 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.34 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.32 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.42 | MC |
| SRR1213691 | flower | wt | 0.34 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.59 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.17 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.22 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.67 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.45 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.32 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.52 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.55 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.92 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.69 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.55 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.40 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.47 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.57 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.55 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.39 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.07 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.78 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.48 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.38 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.05 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.70 | MC |
| SRR504365 | leaf | wt | 0.37 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.53 | MC |
| SRR6417967 | leaf | H2O_control | 1.40 | MC |
| SRR6417968 | leaf | H2O_control | 0.62 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.67 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.31 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.26 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.66 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.27 | MC |
| SRR1213692 | leaf | wt | 0.29 | MC |
| SRR6502089 | leaf | control | 0.65 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.45 | MC |
| SRR6502100 | leaf | control | 0.54 | MC |
| SRR5856927 | leaf | control | 0.36 | MC |
| SRR5856930 | leaf | salt | 0.17 | MC |
| SRR5856931 | leaf | salt | 0.40 | MC |
| SRR5856932 | leaf | salt | 0.20 | MC |
| SRR5856933 | leaf | control | 0.73 | MC |
| SRR5856934 | leaf | control | 0.25 | MC |
| SRR5856935 | leaf | control | 0.49 | MC |
| SRR5856936 | leaf | salt | 0.23 | MC |
| SRR5856937 | leaf | salt | 0.25 | MC |
| SRR5856938 | leaf | salt | 0.23 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.96 | MC |
| SRR6168974 | leaf | none (control) | 0.34 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.69 | MC |
| SRR6168981 | leaf | none (control) | 0.67 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.61 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.54 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.39 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.70 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.51 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.06 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.15 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.44 | MC |
| SRR1633182 | panicle | WT | 0.84 | MC |
| SRR1633185 | panicle | WT | 0.51 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.45 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.60 | MC |
| SRR5126147 | root | "mock,1_day" | 0.36 | MC |
| SRR5126148 | root | "mock,1_day" | 0.35 | MC |
| SRR5126149 | root | "mock,1_day" | 0.53 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.52 | MC |
| SRR5126153 | root | "mock,7_days" | 0.59 | MC |
| SRR5126155 | root | "mock,7_days" | 0.87 | MC |
| SRR5126157 | root | "mock,7_days" | 0.75 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.11 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.46 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.49 | MC |
| SRR5126165 | root | "mock,14_days" | 1.17 | MC |
| SRR5126167 | root | "mock,14_days" | 0.58 | MC |
| SRR5126169 | root | "mock,14_days" | 0.81 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.06 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.48 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.36 | MC |
| SRR1213694 | root | wt | 0.55 | MC |
| SRR1213695 | root | wt | 0.19 | MC |
| SRR4947480 | root | control | 0.62 | MC |
| SRR4947482 | root | Al | 0.78 | MC |
| SRR4947499 | root | Al | 0.57 | MC |
| SRR4947508 | root | Al | 0.64 | MC |
| SRR4947509 | root | Al | 0.61 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.63 | MC |
| SRR6502094 | root | control | 0.52 | MC |
| SRR6502095 | root | control | 1.08 | MC |
| SRR6502096 | root | control | 0.80 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.02 | MC |
| SRR6502106 | root | control | 0.72 | MC |
| SRR6502107 | root | control | 0.43 | MC |
| SRR6502108 | root | control | 0.80 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.83 | MC |
| SRR2154083 | seedling | wt | 0.46 | MC |
| SRR2154087 | seedling | wt | 0.43 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR3098742 | seedling | wt | 0.70 | MC |
| SRR3098743 | seedling | wt | 0.24 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.36 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.50 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.48 | MC |
| SRR358792 | seedling | wt | 0.75 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.32 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.48 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.61 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.17 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.32 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.21 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.61 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.22 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.39 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.38 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.33 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.70 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.29 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.45 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.45 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.31 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.35 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.84 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.40 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.68 | MC |