| SRR4457250 | 2nd_leaf | DAH4 | 0.48 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.40 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.28 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.77 | MC |
| SRR3745126 | anther | wt | 0.49 | MC |
| SRR5560728 | caryopsis | wild_type | 0.58 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.40 | MC |
| SRR7265401 | coleoptile | 2dA | 0.39 | MC |
| SRR7265402 | coleoptile | 2dA | 0.36 | MC |
| SRR7265404 | coleoptile | 2dN | 0.47 | MC |
| SRR7265406 | coleoptile | 3dA | 0.30 | MC |
| SRR7265409 | coleoptile | 3dN | 1.39 | MC |
| SRR7265410 | coleoptile | 3dN | 0.39 | MC |
| SRR7265413 | coleoptile | 4dA | 0.74 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.05 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.40 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.93 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.99 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.73 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.41 | MC |
| SRR7265376 | embryo | 1hA | 0.44 | MC |
| SRR7265377 | embryo | 1hA | 0.51 | MC |
| SRR7265378 | embryo | 1hA | 0.92 | MC |
| SRR7265379 | embryo | 1hN | 0.72 | MC |
| SRR7265380 | embryo | 1hN | 0.43 | MC |
| SRR7265381 | embryo | 1hN | 0.45 | MC |
| SRR7265384 | embryo | 3hA | 0.34 | MC |
| SRR7265385 | embryo | 3hN | 0.41 | MC |
| SRR7265389 | embryo | 12hA | 1.04 | MC |
| SRR7265390 | embryo | 12hA | 1.22 | MC |
| SRR7265391 | embryo | 12hN | 0.58 | MC |
| SRR7265392 | embryo | 12hN | 0.49 | MC |
| SRR7265394 | embryo | 24hA | 0.55 | MC |
| SRR7265395 | embryo | 24hA | 0.53 | MC |
| SRR7265396 | embryo | 24hA | 0.46 | MC |
| SRR7265397 | embryo | 24hN | 0.60 | MC |
| SRR7265398 | embryo | 24hN | 0.69 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.29 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.20 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.53 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.32 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.40 | MC |
| SRR8240818 | leaf | wild_type | 0.36 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.53 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.56 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.59 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.94 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.55 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.79 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.79 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.39 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.43 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.27 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.33 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.29 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.51 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.30 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.90 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.57 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.60 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.75 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.33 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.57 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.62 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.74 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.47 | MC |
| SRR504365 | leaf | wt | 0.34 | MC |
| SRR6417967 | leaf | H2O_control | 0.55 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.37 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.27 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.40 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.24 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.37 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.42 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.26 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.29 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.63 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.58 | MC |
| SRR1213692 | leaf | wt | 0.57 | MC |
| SRR1213693 | leaf | wt | 0.66 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.48 | MC |
| SRR5856927 | leaf | control | 1.93 | MC |
| SRR5856928 | leaf | control | 1.48 | MC |
| SRR5856929 | leaf | control | 1.08 | MC |
| SRR5856930 | leaf | salt | 0.69 | MC |
| SRR5856931 | leaf | salt | 0.73 | MC |
| SRR5856932 | leaf | salt | 0.34 | MC |
| SRR5856933 | leaf | control | 1.98 | MC |
| SRR5856934 | leaf | control | 0.89 | MC |
| SRR5856935 | leaf | control | 1.47 | MC |
| SRR5856936 | leaf | salt | 1.02 | MC |
| SRR5856937 | leaf | salt | 0.87 | MC |
| SRR5856938 | leaf | salt | 0.37 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.02 | MC |
| SRR6168975 | leaf | none (control) | 0.51 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 5.36 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.87 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 5.26 | MC |
| SRR6168980 | leaf | none (control) | 0.19 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.88 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.94 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.77 | MC |
| SRR8582888 | panicle | AM | 0.38 | MC |
| SRR8582889 | panicle | AM | 0.32 | MC |
| SRR8582890 | panicle | AM | 0.52 | MC |
| SRR8582891 | panicle | PM | 0.47 | MC |
| SRR8582892 | panicle | PM | 1.36 | MC |
| SRR8582893 | panicle | PM | 0.67 | MC |
| SRR5110432 | panicle | Dawn | 0.55 | MC |
| SRR4947496 | root | control | 0.89 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.78 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.34 | MC |
| SRR5110445 | panicle | Dusk | 0.54 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.70 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.65 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.74 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.51 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.45 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.28 | MC |
| SRR1633182 | panicle | WT | 0.42 | MC |
| SRR1633185 | panicle | WT | 1.59 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.28 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.48 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.36 | MC |
| SRR5126147 | root | "mock,1_day" | 0.33 | MC |
| SRR5126149 | root | "mock,1_day" | 0.42 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.37 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.44 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.38 | MC |
| SRR5126155 | root | "mock,7_days" | 0.27 | MC |
| SRR5126157 | root | "mock,7_days" | 0.76 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.35 | MC |
| SRR5126165 | root | "mock,14_days" | 0.36 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.56 | MC |
| SRR1213694 | root | wt | 0.57 | MC |
| SRR1213695 | root | wt | 0.65 | MC |
| SRR4947482 | root | Al | 0.44 | MC |
| SRR4947484 | root | Al | 0.65 | MC |
| SRR4947485 | root | Al | 0.94 | MC |
| SRR4947491 | root | Al | 0.68 | MC |
| SRR4947497 | root | control | 1.15 | MC |
| SRR4947499 | root | Al | 1.17 | MC |
| SRR4947500 | root | Al | 0.82 | MC |
| SRR4947501 | root | Al | 1.32 | MC |
| SRR4947504 | root | control | 0.59 | MC |
| SRR4947509 | root | Al | 0.67 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502096 | root | control | 0.34 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.29 | MC |
| SRR6441554 | seedling | wild_type | 0.27 | MC |
| SRR2154086 | seedling | wt | 0.59 | MC |
| SRR2154087 | seedling | wt | 0.42 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.58 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.54 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.06 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.33 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.38 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.41 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.12 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.14 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.52 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.33 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.30 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.21 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.22 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.59 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.49 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.78 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.18 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.33 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.80 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.67 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.34 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.27 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.36 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.59 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.53 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.75 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.30 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.35 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.36 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.58 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.43 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.66 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |