| SRR4457249 | 2nd_leaf | DAH4 | 2.64 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 4.66 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.83 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.30 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.70 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.57 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.22 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.52 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.08 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.47 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 5.96 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.57 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 6.33 | MC |
| SRR3745125 | anther | wt | 3.23 | MC |
| SRR3745126 | anther | wt | 3.86 | MC |
| SRR3745127 | anther | wt | 2.01 | MC |
| SRR358795 | callus | wt | 5.40 | MC |
| SRR358797 | callus | wt | 8.82 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.86 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.44 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.83 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.30 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.51 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.52 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.96 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.67 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.66 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.15 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.51 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.78 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.48 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.82 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.82 | MC |
| SRR4457233 | flag_leaf | DAH4 | 3.03 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.18 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.56 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.68 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.86 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.43 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.52 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.25 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.08 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.40 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.43 | MC |
| SRR4457246 | flag_leaf | DAH44 | 4.17 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.91 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.05 | MC |
| SRR8060835 | leaf | wild_type | 2.66 | MC |
| SRR8060837 | leaf | wild_type | 2.54 | MC |
| SRR8240824 | leaf | wild_type | 0.85 | MC |
| SRR8240826 | leaf | wild_type | 0.45 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.09 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.05 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.29 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.79 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.74 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.88 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.15 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.21 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.93 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.73 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.09 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.08 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.29 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.42 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.58 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.75 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.34 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.50 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.42 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.28 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.31 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.92 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.67 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.57 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.73 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.67 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.57 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.73 | MC |
| SRR1761528 | leaf | drought | 3.67 | MC |
| SRR1761529 | leaf | drought | 3.57 | MC |
| SRR1761530 | leaf | control | 5.73 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.33 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.44 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.51 | MC |
| SRR6417967 | leaf | H2O_control | 3.15 | MC |
| SRR6417968 | leaf | H2O_control | 1.23 | MC |
| SRR6417969 | leaf | H2O_control | 1.53 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.27 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.93 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.70 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.66 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.25 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.54 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.80 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.80 | MC |
| SRR1213692 | leaf | wt | 4.01 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.48 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.03 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.16 | MC |
| SRR6502088 | leaf | control | 2.12 | MC |
| SRR6502089 | leaf | control | 3.58 | MC |
| SRR6502090 | leaf | control | 2.01 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.90 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.57 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.60 | MC |
| SRR6502100 | leaf | control | 2.42 | MC |
| SRR6502101 | leaf | control | 3.02 | MC |
| SRR5856927 | leaf | control | 1.54 | MC |
| SRR5856928 | leaf | control | 1.05 | MC |
| SRR5856929 | leaf | control | 1.77 | MC |
| SRR5856930 | leaf | salt | 0.65 | MC |
| SRR5856931 | leaf | salt | 0.64 | MC |
| SRR5856932 | leaf | salt | 1.09 | MC |
| SRR5856933 | leaf | control | 1.94 | MC |
| SRR5856934 | leaf | control | 1.39 | MC |
| SRR5856935 | leaf | control | 1.90 | MC |
| SRR5856936 | leaf | salt | 1.53 | MC |
| SRR5856937 | leaf | salt | 0.71 | MC |
| SRR5856938 | leaf | salt | 1.11 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.71 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.94 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.90 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.53 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.43 | MC |
| SRR6168974 | leaf | none (control) | 4.36 | MC |
| SRR6168975 | leaf | none (control) | 2.83 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.37 | MC |
| SRR6168979 | leaf | none (control) | 0.34 | MC |
| SRR6168980 | leaf | none (control) | 0.82 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.15 | MC |
| SRR8582888 | panicle | AM | 2.88 | MC |
| SRR8582889 | panicle | AM | 1.33 | MC |
| SRR8582891 | panicle | PM | 4.73 | MC |
| SRR8582893 | panicle | PM | 4.11 | MC |
| SRR4947496 | root | control | 3.96 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 3.90 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 4.29 | MC |
| SRR5110439 | panicle | Dawn + 7h | 5.32 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.68 | MC |
| SRR5126148 | root | "mock,1_day" | 2.50 | MC |
| SRR5126149 | root | "mock,1_day" | 2.99 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.21 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.67 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.04 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.40 | MC |
| SRR4947478 | root | control | 3.18 | MC |
| SRR4947479 | root | control | 3.96 | MC |
| SRR4947480 | root | control | 4.60 | MC |
| SRR4947488 | root | control | 2.89 | MC |
| SRR4947489 | root | control | 2.31 | MC |
| SRR4947493 | root | Al | 3.65 | MC |
| SRR4947504 | root | control | 4.82 | MC |
| SRR4947508 | root | Al | 4.71 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.74 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.01 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.89 | MC |
| SRR6502094 | root | control | 1.20 | MC |
| SRR6502096 | root | control | 3.30 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.31 | MC |
| SRR6502106 | root | control | 4.10 | MC |
| SRR6502107 | root | control | 3.64 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.90 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.49 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.16 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.66 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.96 | MC |
| SRR6441554 | seedling | wild_type | 2.58 | MC |
| SRR6441555 | seedling | wild_type | 1.43 | MC |
| SRR2154086 | seedling | wt | 3.42 | MC |
| SRR2154083 | seedling | wt | 3.04 | MC |
| SRR2154085 | seedling | wt | 4.23 | MC |
| SRR2154087 | seedling | wt | 3.60 | MC |
| SRR3098742 | seedling | wt | 2.16 | MC |
| SRR3098743 | seedling | wt | 2.57 | MC |
| SRR2857719 | seedling | drought_stress_0h | 4.12 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.45 | MC |
| SRR1944583 | seedling | no_treatment | 1.36 | MC |
| SRR358791 | seedling | wt | 6.04 | MC |
| SRR358793 | seedling | wt | 1.74 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.76 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.44 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.52 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.70 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.71 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.64 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.75 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.58 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.92 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.90 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.44 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.57 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.80 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.34 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.00 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.32 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.67 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.23 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.99 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.12 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.37 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.17 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.40 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.06 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.61 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.15 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 7.43 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.77 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 8.38 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 7.62 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.08 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.37 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.38 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.06 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.68 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.92 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.91 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 6.84 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.56 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 6.55 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 5.09 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 7.91 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.81 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.60 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.87 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 6.32 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.06 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 6.96 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 7.53 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.12 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 3.09 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.30 | MC |