| SRR4457249 | 2nd_leaf | DAH4 | 0.82 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.78 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.40 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.32 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.47 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.29 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.75 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.71 | MC |
| SRR5560727 | caryopsis | wild_type | 1.22 | MC |
| SRR5560728 | caryopsis | wild_type | 0.65 | MC |
| SRR5560729 | caryopsis | wild_type | 1.25 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.08 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.60 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.20 | MC |
| SRR7265407 | coleoptile | 3dA | 0.31 | MC |
| SRR7265410 | coleoptile | 3dN | 0.48 | MC |
| SRR7265416 | coleoptile | 4dN | 0.72 | MC |
| SRR7265417 | coleoptile | 4dN | 0.63 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.54 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.30 | MC |
| SRR7265378 | embryo | 1hA | 0.34 | MC |
| SRR7265381 | embryo | 1hN | 0.23 | MC |
| SRR7265393 | embryo | 12hN | 0.64 | MC |
| SRR2338868 | endosprem | high_temperature | 0.45 | MC |
| SRR976168 | flag_leaf | wild_type | 0.34 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.39 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.81 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.38 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.23 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.31 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.75 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.44 | MC |
| SRR1213691 | flower | wt | 0.69 | MC |
| SRR8060835 | leaf | wild_type | 1.27 | MC |
| SRR8060836 | leaf | wild_type | 2.16 | MC |
| SRR8060837 | leaf | wild_type | 1.91 | MC |
| SRR8240824 | leaf | wild_type | 1.59 | MC |
| SRR8240825 | leaf | wild_type | 0.51 | MC |
| SRR8240818 | leaf | wild_type | 0.31 | MC |
| SRR8240819 | leaf | wild_type | 0.32 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.77 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.09 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.40 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.49 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.37 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.19 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.21 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.50 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.32 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.46 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.73 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.90 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.49 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.78 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.60 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.13 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.50 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.59 | MC |
| SRR504365 | leaf | wt | 2.58 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.70 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.74 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.93 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.43 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.21 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.36 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.55 | MC |
| SRR1213692 | leaf | wt | 1.82 | MC |
| SRR1213693 | leaf | wt | 0.48 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.12 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.92 | MC |
| SRR6502089 | leaf | control | 1.04 | MC |
| SRR6502090 | leaf | control | 0.87 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.60 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.57 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.89 | MC |
| SRR6502100 | leaf | control | 1.06 | MC |
| SRR6502101 | leaf | control | 0.54 | MC |
| SRR6502102 | leaf | control | 0.61 | MC |
| SRR5856928 | leaf | control | 0.28 | MC |
| SRR5856929 | leaf | control | 0.19 | MC |
| SRR5856930 | leaf | salt | 0.26 | MC |
| SRR5856931 | leaf | salt | 0.26 | MC |
| SRR5856933 | leaf | control | 0.35 | MC |
| SRR5856934 | leaf | control | 0.32 | MC |
| SRR5856935 | leaf | control | 0.30 | MC |
| SRR5856936 | leaf | salt | 0.20 | MC |
| SRR5856937 | leaf | salt | 0.41 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.85 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.49 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.99 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.48 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.42 | MC |
| SRR6168973 | leaf | none (control) | 0.75 | MC |
| SRR6168974 | leaf | none (control) | 1.26 | MC |
| SRR6168975 | leaf | none (control) | 0.95 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.47 | MC |
| SRR8582889 | panicle | AM | 0.22 | MC |
| SRR8582890 | panicle | AM | 0.23 | MC |
| SRR8582891 | panicle | PM | 2.06 | MC |
| SRR8582892 | panicle | PM | 4.93 | MC |
| SRR8582893 | panicle | PM | 4.07 | MC |
| SRR5110429 | panicle | Dawn | 0.74 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.62 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.93 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.46 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.99 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.16 | MC |
| SRR5110445 | panicle | Dusk | 0.85 | MC |
| SRR5110446 | panicle | Dusk | 0.65 | MC |
| SRR5110447 | panicle | Dusk | 0.91 | MC |
| SRR5110448 | panicle | Dusk | 0.55 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.96 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.70 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.66 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.59 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.80 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.99 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.65 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.56 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.44 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.74 | MC |
| SRR1633182 | panicle | WT | 1.08 | MC |
| SRR1633185 | panicle | WT | 1.80 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.62 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.34 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.39 | MC |
| SRR5126169 | root | "mock,14_days" | 0.29 | MC |
| SRR1213695 | root | wt | 0.30 | MC |
| SRR6441554 | seedling | wild_type | 0.31 | MC |
| SRR6441555 | seedling | wild_type | 0.32 | MC |
| SRR2154086 | seedling | wt | 0.98 | MC |
| SRR2154082 | seedling | wt | 0.51 | MC |
| SRR2154083 | seedling | wt | 1.56 | MC |
| SRR2154085 | seedling | wt | 0.66 | MC |
| SRR2154087 | seedling | wt | 0.88 | MC |
| SRR3098741 | seedling | wt | 0.46 | MC |
| SRR3098742 | seedling | wt | 0.44 | MC |
| SRR3098743 | seedling | wt | 0.54 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.66 | MC |
| SRR1944583 | seedling | no_treatment | 0.46 | MC |
| SRR358792 | seedling | wt | 0.67 | MC |
| SRR358793 | seedling | wt | 0.51 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.05 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.69 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.24 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.61 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.55 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.47 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.24 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.41 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.20 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.31 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.19 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.43 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.59 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.59 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.40 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.08 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.90 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.49 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.13 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.92 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.14 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.73 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.57 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.65 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.60 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.81 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.30 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.91 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.83 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.88 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.09 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.69 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.88 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.58 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.09 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.63 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.66 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.73 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.12 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.47 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.14 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.09 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.49 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.58 | MC |