| SRR4457249 | 2nd_leaf | DAH4 | 0.83 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.43 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.39 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.74 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.79 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.74 | MC |
| SRR5560727 | caryopsis | wild_type | 1.08 | MC |
| SRR5560728 | caryopsis | wild_type | 1.60 | MC |
| SRR5560729 | caryopsis | wild_type | 1.15 | MC |
| SRR7265405 | coleoptile | 2dN | 0.65 | MC |
| SRR7265409 | coleoptile | 3dN | 0.43 | MC |
| SRR7265381 | embryo | 1hN | 0.45 | MC |
| SRR7265385 | embryo | 3hN | 0.98 | MC |
| SRR7265386 | embryo | 3hN | 0.52 | MC |
| SRR7265388 | embryo | 12hA | 1.21 | MC |
| SRR7265392 | embryo | 12hN | 0.44 | MC |
| SRR7265394 | embryo | 24hA | 0.74 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.28 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.58 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.73 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.63 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.77 | MC |
| SRR8060835 | leaf | wild_type | 1.26 | MC |
| SRR8060836 | leaf | wild_type | 1.37 | MC |
| SRR8060837 | leaf | wild_type | 1.61 | MC |
| SRR8240826 | leaf | wild_type | 0.34 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.60 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.58 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.93 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.30 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.60 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.02 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.55 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.82 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.91 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.63 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.65 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.54 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.46 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.36 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.63 | MC |
| SRR6417968 | leaf | H2O_control | 0.93 | MC |
| SRR6417969 | leaf | H2O_control | 0.62 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.94 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.30 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.49 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.13 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.68 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.19 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.95 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.01 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.95 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.80 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.87 | MC |
| SRR1213693 | leaf | wt | 2.15 | MC |
| SRR6502088 | leaf | control | 1.18 | MC |
| SRR6168973 | leaf | none (control) | 0.56 | MC |
| SRR6168974 | leaf | none (control) | 0.95 | MC |
| SRR6168975 | leaf | none (control) | 0.89 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.36 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.37 | MC |
| SRR6168981 | leaf | none (control) | 0.72 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.97 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.16 | MC |
| SRR8582890 | panicle | AM | 0.66 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.65 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.07 | MC |
| SRR5126147 | root | "mock,1_day" | 0.97 | MC |
| SRR5126148 | root | "mock,1_day" | 0.81 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.70 | MC |
| SRR5126155 | root | "mock,7_days" | 0.46 | MC |
| SRR5126157 | root | "mock,7_days" | 1.09 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.51 | MC |
| SRR5126169 | root | "mock,14_days" | 0.65 | MC |
| SRR1213694 | root | wt | 0.45 | MC |
| SRR1213695 | root | wt | 0.66 | MC |
| SRR4947489 | root | control | 0.61 | MC |
| SRR4947505 | root | control | 1.08 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.14 | MC |
| SRR6441555 | seedling | wild_type | 0.26 | MC |
| SRR2154086 | seedling | wt | 0.87 | MC |
| SRR2154085 | seedling | wt | 0.58 | MC |
| SRR2154087 | seedling | wt | 0.56 | MC |
| SRR3098741 | seedling | wt | 0.60 | MC |
| SRR3098742 | seedling | wt | 0.61 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.54 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.67 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.50 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.79 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.63 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.94 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.96 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.97 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.64 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.56 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.62 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.48 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.09 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.77 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.78 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.69 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.98 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.77 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.36 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.24 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.09 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.67 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.22 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.42 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.17 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.90 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.09 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.97 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.40 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.20 | MC |