| SRR1740428 | root_meristematic_zone | wt | 1.44 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.26 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.29 | MC |
| SRR5856928 | leaf | control | 0.21 | MC |
| SRR5856927 | leaf | control | 1.31 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.66 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.51 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.97 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.46 | MC |
| SRR5560728 | caryopsis | wild_type | 0.77 | MC |
| SRR5560727 | caryopsis | wild_type | 0.69 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.79 | MC |
| SRR3098742 | seedling | wt | 0.27 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.96 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.70 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.52 | MC |
| SRR5126155 | root | "mock,7_days" | 0.33 | MC |
| SRR6168980 | leaf | none (control) | 0.61 | MC |
| SRR7265409 | coleoptile | 3dN | 0.55 | MC |
| SRR7265402 | coleoptile | 2dA | 1.21 | MC |
| SRR7265401 | coleoptile | 2dA | 0.83 | MC |
| SRR7265400 | coleoptile | 2dA | 0.40 | MC |
| SRR7265406 | coleoptile | 3dA | 1.00 | MC |
| SRR7265405 | coleoptile | 2dN | 0.44 | MC |
| SRR358798 | callus | wt | 2.16 | MC |
| SRR2338869 | endosprem | high_temperature | 0.94 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.29 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.08 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.26 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.94 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.84 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.47 | MC |
| SRR5856931 | leaf | salt | 1.79 | MC |
| SRR5856930 | leaf | salt | 1.10 | MC |
| SRR5856933 | leaf | control | 0.62 | MC |
| SRR5856932 | leaf | salt | 1.29 | MC |
| SRR5856937 | leaf | salt | 1.74 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.56 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.71 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.60 | MC |
| SRR5126169 | root | "mock,14_days" | 0.57 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.71 | MC |
| SRR5126167 | root | "mock,14_days" | 0.87 | MC |
| SRR7265388 | embryo | 12hA | 1.54 | MC |
| SRR7265389 | embryo | 12hA | 1.45 | MC |
| SRR7265387 | embryo | 3hN | 2.51 | MC |
| SRR7265382 | embryo | 3hA | 2.84 | MC |
| SRR7265383 | embryo | 3hA | 4.35 | MC |
| SRR6168975 | leaf | none (control) | 0.74 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.65 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.00 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.24 | MC |
| SRR8582891 | panicle | PM | 0.90 | MC |
| SRR8582893 | panicle | PM | 0.26 | MC |
| SRR2154083 | seedling | wt | 0.37 | MC |
| SRR2154082 | seedling | wt | 0.38 | MC |
| SRR2154084 | seedling | wt | 0.53 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.97 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.33 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.48 | MC |
| SRR6320473 | carpel | wt | 1.50 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.68 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.92 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.60 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.62 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.84 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.00 | MC |
| SRR7265393 | embryo | 12hN | 0.49 | MC |
| SRR7265392 | embryo | 12hN | 1.86 | MC |
| SRR7265391 | embryo | 12hN | 1.65 | MC |
| SRR7265390 | embryo | 12hA | 1.17 | MC |
| SRR7265397 | embryo | 24hN | 0.91 | MC |
| SRR7265396 | embryo | 24hA | 0.79 | MC |
| SRR7265395 | embryo | 24hA | 1.89 | MC |
| SRR7265394 | embryo | 24hA | 1.21 | MC |
| SRR8240825 | leaf | wild_type | 0.24 | MC |
| SRR1761529 | leaf | drought | 2.50 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.69 | MC |
| SRR6168973 | leaf | none (control) | 0.28 | MC |
| SRR6168974 | leaf | none (control) | 0.88 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.71 | MC |
| SRR6168979 | leaf | none (control) | 1.76 | MC |
| SRR1633182 | panicle | WT | 1.84 | MC |
| SRR1633185 | panicle | WT | 1.61 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.12 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.88 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.97 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.10 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.40 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.50 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.50 | MC |
| SRR5126148 | root | "mock,1_day" | 0.46 | MC |
| SRR5856938 | leaf | salt | 1.83 | MC |
| SRR5126147 | root | "mock,1_day" | 0.65 | MC |
| SRR7265415 | coleoptile | 4dN | 0.66 | MC |
| SRR7265416 | coleoptile | 4dN | 0.77 | MC |
| SRR7265411 | coleoptile | 3dN | 0.46 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.40 | MC |
| SRR5856935 | leaf | control | 0.43 | MC |
| SRR5856934 | leaf | control | 0.32 | MC |