| SRR4457249 | 2nd_leaf | DAH4 | 2.38 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.18 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.20 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.27 | MC |
| SRR3745127 | anther | wt | 3.95 | MC |
| SRR5560728 | caryopsis | wild_type | 3.13 | MC |
| SRR5560729 | caryopsis | wild_type | 3.34 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.57 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.81 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.47 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.87 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.19 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.26 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.16 | MC |
| SRR2338867 | endosprem | control | 1.37 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.99 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.17 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.46 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.10 | MC |
| SRR8060836 | leaf | wild_type | 0.78 | MC |
| SRR8060837 | leaf | wild_type | 0.62 | MC |
| SRR8240824 | leaf | wild_type | 0.80 | MC |
| SRR8240819 | leaf | wild_type | 1.07 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.95 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.41 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.93 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.10 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.28 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.01 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.38 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.68 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.36 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.38 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.77 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.90 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.40 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.55 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.23 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.04 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.39 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.10 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.10 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.74 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.06 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.10 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.74 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.31 | MC |
| SRR1213692 | leaf | wt | 2.42 | MC |
| SRR6502088 | leaf | control | 2.23 | MC |
| SRR6502089 | leaf | control | 1.45 | MC |
| SRR6502090 | leaf | control | 1.67 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.88 | MC |
| SRR6502102 | leaf | control | 3.89 | MC |
| SRR5856931 | leaf | salt | 1.55 | MC |
| SRR5856932 | leaf | salt | 1.10 | MC |
| SRR5856933 | leaf | control | 2.18 | MC |
| SRR5856935 | leaf | control | 1.05 | MC |
| SRR5856936 | leaf | salt | 0.78 | MC |
| SRR5856938 | leaf | salt | 1.08 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.47 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.19 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.22 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 5.23 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.49 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.53 | MC |
| SRR6168974 | leaf | none (control) | 3.04 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.35 | MC |
| SRR6168981 | leaf | none (control) | 2.48 | MC |
| SRR8582890 | panicle | AM | 2.07 | MC |
| SRR8582891 | panicle | PM | 5.19 | MC |
| SRR8582892 | panicle | PM | 4.08 | MC |
| SRR8582893 | panicle | PM | 1.11 | MC |
| SRR4947496 | root | control | 3.27 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.73 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.65 | MC |
| SRR5126153 | root | "mock,7_days" | 4.13 | MC |
| SRR5126155 | root | "mock,7_days" | 2.77 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.46 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.35 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 5.20 | MC |
| SRR4947478 | root | control | 3.95 | MC |
| SRR4947481 | root | control | 1.65 | MC |
| SRR4947483 | root | Al | 3.68 | MC |
| SRR4947484 | root | Al | 4.92 | MC |
| SRR4947491 | root | Al | 1.37 | MC |
| SRR4947492 | root | Al | 2.61 | MC |
| SRR4947493 | root | Al | 3.93 | MC |
| SRR4947497 | root | control | 2.87 | MC |
| SRR4947498 | root | Al | 2.81 | MC |
| SRR4947499 | root | Al | 4.61 | MC |
| SRR4947502 | root | control | 1.71 | MC |
| SRR4947504 | root | control | 4.23 | MC |
| SRR4947505 | root | control | 4.65 | MC |
| SRR4947507 | root | Al | 3.89 | MC |
| SRR4947508 | root | Al | 2.56 | MC |
| SRR4947509 | root | Al | 3.61 | MC |
| SRR6502096 | root | control | 0.49 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.25 | MC |
| SRR6502106 | root | control | 2.38 | MC |
| SRR6502107 | root | control | 2.60 | MC |
| SRR6502108 | root | control | 0.66 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.62 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.15 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.88 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.51 | MC |
| SRR6441555 | seedling | wild_type | 0.97 | MC |
| SRR3098741 | seedling | wt | 1.25 | MC |
| SRR3098742 | seedling | wt | 1.02 | MC |
| SRR3098743 | seedling | wt | 1.42 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.36 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.54 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.18 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.27 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.19 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.15 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.59 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.88 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.89 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.49 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.25 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.88 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.40 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.69 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.97 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.52 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.60 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.44 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.73 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.51 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.15 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.52 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.67 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.81 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.51 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.48 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.26 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.90 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.94 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 7.32 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.68 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.08 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.77 | MC |