| SRR4457249 | 2nd_leaf | DAH4 | 2.49 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.15 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.11 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.04 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.05 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 4.15 | MC |
| SRR5560727 | caryopsis | wild_type | 0.93 | MC |
| SRR5560728 | caryopsis | wild_type | 2.96 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR4947495 | root | control | 0.92 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.82 | MC |
| SRR7265402 | coleoptile | 2dA | 1.43 | MC |
| SRR7265403 | coleoptile | 2dN | 4.19 | MC |
| SRR7265405 | coleoptile | 2dN | 0.71 | MC |
| SRR7265406 | coleoptile | 3dA | 3.05 | MC |
| SRR7265408 | coleoptile | 3dA | 0.36 | MC |
| SRR7265409 | coleoptile | 3dN | 3.77 | MC |
| SRR7265410 | coleoptile | 3dN | 2.49 | MC |
| SRR7265411 | coleoptile | 3dN | 1.60 | MC |
| SRR7265415 | coleoptile | 4dN | 2.72 | MC |
| SRR7265416 | coleoptile | 4dN | 2.71 | MC |
| SRR7265417 | coleoptile | 4dN | 3.03 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.69 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.91 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.66 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.53 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.83 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.20 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.80 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.73 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.88 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.80 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.34 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.07 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.91 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.66 | MC |
| SRR7265376 | embryo | 1hA | 1.19 | MC |
| SRR7265382 | embryo | 3hA | 1.54 | MC |
| SRR7265383 | embryo | 3hA | 4.45 | MC |
| SRR7265384 | embryo | 3hA | 1.26 | MC |
| SRR7265385 | embryo | 3hN | 3.07 | MC |
| SRR7265388 | embryo | 12hA | 0.56 | MC |
| SRR7265389 | embryo | 12hA | 4.15 | MC |
| SRR7265390 | embryo | 12hA | 3.49 | MC |
| SRR7265392 | embryo | 12hN | 0.74 | MC |
| SRR7265394 | embryo | 24hA | 1.71 | MC |
| SRR7265397 | embryo | 24hN | 3.51 | MC |
| SRR7265398 | embryo | 24hN | 4.62 | MC |
| SRR7265399 | embryo | 24hN | 3.96 | MC |
| SRR2338868 | endosprem | high_temperature | 0.90 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.80 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.31 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.22 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.35 | MC |
| SRR8060835 | leaf | wild_type | 2.33 | MC |
| SRR8060836 | leaf | wild_type | 2.68 | MC |
| SRR8240825 | leaf | wild_type | 0.22 | MC |
| SRR8240818 | leaf | wild_type | 1.55 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.51 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.74 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.60 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.91 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.95 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.72 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.69 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.25 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.32 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.21 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.19 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.62 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.62 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.88 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.01 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.49 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.84 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.94 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.15 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.73 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.23 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.77 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.60 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.54 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.53 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.35 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.98 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.96 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.54 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.73 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.51 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.54 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.73 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.51 | MC |
| SRR1761529 | leaf | drought | 3.54 | MC |
| SRR1761530 | leaf | control | 2.73 | MC |
| SRR1761531 | leaf | control | 2.51 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.02 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.14 | MC |
| SRR6417968 | leaf | H2O_control | 1.94 | MC |
| SRR6417969 | leaf | H2O_control | 0.99 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.87 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.74 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.81 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 3.35 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.47 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.93 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.02 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.26 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.29 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.14 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.46 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.47 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.76 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.99 | MC |
| SRR6502089 | leaf | control | 2.92 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.37 | MC |
| SRR6502100 | leaf | control | 2.58 | MC |
| SRR6502101 | leaf | control | 2.51 | MC |
| SRR5856938 | leaf | salt | 0.99 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.73 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.04 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 1.58 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 5.23 | MC |
| SRR6168974 | leaf | none (control) | 0.47 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.89 | MC |
| SRR6168980 | leaf | none (control) | 1.27 | MC |
| SRR6168981 | leaf | none (control) | 0.83 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.00 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.39 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.42 | MC |
| SRR8582889 | panicle | AM | 0.67 | MC |
| SRR8582891 | panicle | PM | 0.85 | MC |
| SRR8582892 | panicle | PM | 3.67 | MC |
| SRR8582893 | panicle | PM | 1.26 | MC |
| SRR5110429 | panicle | Dawn | 4.30 | MC |
| SRR5110430 | panicle | Dawn | 3.52 | MC |
| SRR5110432 | panicle | Dawn | 2.99 | MC |
| SRR4947496 | root | control | 1.93 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.42 | MC |
| SRR5110445 | panicle | Dusk | 4.46 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.31 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.68 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.31 | MC |
| SRR1633182 | panicle | WT | 1.92 | MC |
| SRR1633185 | panicle | WT | 1.95 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.08 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.13 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.46 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.86 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.60 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.63 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.76 | MC |
| SRR4947478 | root | control | 0.65 | MC |
| SRR4947479 | root | control | 0.53 | MC |
| SRR4947480 | root | control | 1.21 | MC |
| SRR4947481 | root | control | 0.62 | MC |
| SRR4947482 | root | Al | 0.91 | MC |
| SRR4947483 | root | Al | 0.88 | MC |
| SRR4947484 | root | Al | 1.00 | MC |
| SRR4947485 | root | Al | 1.17 | MC |
| SRR4947488 | root | control | 1.20 | MC |
| SRR4947489 | root | control | 1.28 | MC |
| SRR4947490 | root | Al | 1.89 | MC |
| SRR4947491 | root | Al | 1.34 | MC |
| SRR4947492 | root | Al | 1.09 | MC |
| SRR4947493 | root | Al | 1.84 | MC |
| SRR4947497 | root | control | 3.16 | MC |
| SRR4947498 | root | Al | 1.89 | MC |
| SRR4947499 | root | Al | 1.68 | MC |
| SRR4947500 | root | Al | 1.80 | MC |
| SRR4947501 | root | Al | 1.64 | MC |
| SRR4947503 | root | control | 0.98 | MC |
| SRR4947504 | root | control | 1.00 | MC |
| SRR4947505 | root | control | 0.61 | MC |
| SRR4947506 | root | Al | 1.36 | MC |
| SRR4947507 | root | Al | 2.00 | MC |
| SRR4947508 | root | Al | 1.76 | MC |
| SRR4947509 | root | Al | 0.78 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.52 | MC |
| SRR6502095 | root | control | 0.69 | MC |
| SRR6502096 | root | control | 2.65 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.01 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.52 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.93 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.73 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.06 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.04 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.76 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.89 | MC |
| SRR6441554 | seedling | wild_type | 1.84 | MC |
| SRR6441555 | seedling | wild_type | 2.91 | MC |
| SRR3098741 | seedling | wt | 1.46 | MC |
| SRR3098742 | seedling | wt | 0.56 | MC |
| SRR3098743 | seedling | wt | 1.80 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.95 | MC |
| SRR1944583 | seedling | no_treatment | 3.52 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.55 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.13 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.62 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.26 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.33 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.55 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.77 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.95 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.03 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.04 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.22 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.10 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.04 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 7.54 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.40 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 6.51 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.75 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.08 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 10.64 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.30 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.51 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.19 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.43 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.32 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.00 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.93 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.54 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.08 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.49 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.47 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.80 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.67 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.19 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.15 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.91 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.05 | MC |