| SRR4457258 | 2nd_leaf | DAH28 | 0.24 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.30 | MC |
| SRR358795 | callus | wt | 9.11 | MC |
| SRR358797 | callus | wt | 9.38 | MC |
| SRR358798 | callus | wt | 8.77 | MC |
| SRR5560727 | caryopsis | wild_type | 2.39 | MC |
| SRR5560728 | caryopsis | wild_type | 1.61 | MC |
| SRR5560729 | caryopsis | wild_type | 0.88 | MC |
| SRR7265400 | coleoptile | 2dA | 0.31 | MC |
| SRR7265403 | coleoptile | 2dN | 0.82 | MC |
| SRR7265404 | coleoptile | 2dN | 0.71 | MC |
| SRR7265405 | coleoptile | 2dN | 0.74 | MC |
| SRR7265406 | coleoptile | 3dA | 0.40 | MC |
| SRR7265407 | coleoptile | 3dA | 0.47 | MC |
| SRR7265408 | coleoptile | 3dA | 0.38 | MC |
| SRR7265409 | coleoptile | 3dN | 0.84 | MC |
| SRR7265410 | coleoptile | 3dN | 0.72 | MC |
| SRR7265411 | coleoptile | 3dN | 0.69 | MC |
| SRR7265412 | coleoptile | 4dA | 1.39 | MC |
| SRR7265413 | coleoptile | 4dA | 3.23 | MC |
| SRR7265414 | coleoptile | 4dA | 2.60 | MC |
| SRR7265415 | coleoptile | 4dN | 1.36 | MC |
| SRR7265416 | coleoptile | 4dN | 0.95 | MC |
| SRR7265417 | coleoptile | 4dN | 0.99 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.41 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.89 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.32 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.16 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.04 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.18 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.14 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.88 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.70 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.32 | MC |
| SRR7265376 | embryo | 1hA | 1.44 | MC |
| SRR7265377 | embryo | 1hA | 1.47 | MC |
| SRR7265378 | embryo | 1hA | 1.62 | MC |
| SRR7265379 | embryo | 1hN | 0.90 | MC |
| SRR7265380 | embryo | 1hN | 1.08 | MC |
| SRR7265381 | embryo | 1hN | 1.02 | MC |
| SRR7265382 | embryo | 3hA | 2.47 | MC |
| SRR7265383 | embryo | 3hA | 2.27 | MC |
| SRR7265384 | embryo | 3hA | 2.34 | MC |
| SRR7265385 | embryo | 3hN | 1.81 | MC |
| SRR7265386 | embryo | 3hN | 1.30 | MC |
| SRR7265387 | embryo | 3hN | 1.47 | MC |
| SRR7265391 | embryo | 12hN | 1.94 | MC |
| SRR7265392 | embryo | 12hN | 1.42 | MC |
| SRR7265393 | embryo | 12hN | 1.69 | MC |
| SRR7265394 | embryo | 24hA | 0.57 | MC |
| SRR7265395 | embryo | 24hA | 0.56 | MC |
| SRR7265397 | embryo | 24hN | 0.62 | MC |
| SRR7265398 | embryo | 24hN | 0.67 | MC |
| SRR7265399 | embryo | 24hN | 0.56 | MC |
| SRR2338866 | endosprem | control | 1.99 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.28 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.35 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.45 | MC |
| SRR1213691 | flower | wt | 0.44 | MC |
| SRR8060835 | leaf | wild_type | 0.45 | MC |
| SRR8060836 | leaf | wild_type | 0.41 | MC |
| SRR8060837 | leaf | wild_type | 0.32 | MC |
| SRR8240824 | leaf | wild_type | 1.01 | MC |
| SRR8240825 | leaf | wild_type | 0.92 | MC |
| SRR8240826 | leaf | wild_type | 0.22 | MC |
| SRR8240819 | leaf | wild_type | 0.43 | MC |
| SRR8240820 | leaf | wild_type | 0.47 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.42 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.64 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.48 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.79 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.69 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.56 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.55 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.34 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.37 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.47 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.25 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.47 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.62 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.36 | MC |
| SRR504365 | leaf | wt | 1.34 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.41 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.31 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.28 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.38 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.37 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.59 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.60 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.61 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.66 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.65 | MC |
| SRR1213692 | leaf | wt | 0.44 | MC |
| SRR1213693 | leaf | wt | 0.44 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.55 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.82 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.00 | MC |
| SRR6502088 | leaf | control | 0.79 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.48 | MC |
| SRR6502100 | leaf | control | 0.44 | MC |
| SRR6502101 | leaf | control | 0.41 | MC |
| SRR6502102 | leaf | control | 0.40 | MC |
| SRR6168979 | leaf | none (control) | 0.43 | MC |
| SRR6168980 | leaf | none (control) | 0.43 | MC |
| SRR8582888 | panicle | AM | 0.89 | MC |
| SRR8582889 | panicle | AM | 0.48 | MC |
| SRR8582890 | panicle | AM | 0.40 | MC |
| SRR4947496 | root | control | 4.42 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.44 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.25 | MC |
| SRR5126147 | root | "mock,1_day" | 0.64 | MC |
| SRR5126148 | root | "mock,1_day" | 0.61 | MC |
| SRR5126149 | root | "mock,1_day" | 0.52 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.81 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.31 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.67 | MC |
| SRR5126153 | root | "mock,7_days" | 0.51 | MC |
| SRR5126155 | root | "mock,7_days" | 2.01 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.63 | MC |
| SRR5126165 | root | "mock,14_days" | 0.49 | MC |
| SRR5126167 | root | "mock,14_days" | 0.90 | MC |
| SRR5126169 | root | "mock,14_days" | 1.50 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.53 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.55 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.29 | MC |
| SRR1213694 | root | wt | 0.47 | MC |
| SRR1213695 | root | wt | 0.48 | MC |
| SRR4947484 | root | Al | 2.17 | MC |
| SRR4947492 | root | Al | 2.93 | MC |
| SRR4947493 | root | Al | 4.10 | MC |
| SRR4947500 | root | Al | 2.37 | MC |
| SRR4947501 | root | Al | 5.85 | MC |
| SRR4947508 | root | Al | 2.49 | MC |
| SRR4947509 | root | Al | 4.23 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.67 | MC |
| SRR6502095 | root | control | 4.09 | MC |
| SRR6502096 | root | control | 3.20 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.85 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.86 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.85 | MC |
| SRR6502106 | root | control | 4.33 | MC |
| SRR6502108 | root | control | 1.98 | MC |
| SRR6441554 | seedling | wild_type | 0.64 | MC |
| SRR6441555 | seedling | wild_type | 0.53 | MC |
| SRR2154086 | seedling | wt | 1.33 | MC |
| SRR2154082 | seedling | wt | 0.57 | MC |
| SRR2154084 | seedling | wt | 1.25 | MC |
| SRR2154085 | seedling | wt | 0.50 | MC |
| SRR2154087 | seedling | wt | 0.52 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.23 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.75 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.46 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.09 | MC |
| SRR358791 | seedling | wt | 1.94 | MC |
| SRR358792 | seedling | wt | 2.09 | MC |
| SRR358793 | seedling | wt | 0.50 | MC |
| SRR358794 | seedling | wt | 0.50 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.11 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.33 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.49 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.39 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.19 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.30 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.66 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.82 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.93 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.94 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.18 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.45 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.85 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.90 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.74 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.89 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.96 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.40 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.54 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.45 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.33 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.73 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.79 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.73 | MC |