| SRR4457255 | 2nd_leaf | DAH20 | 0.41 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.96 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.26 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.62 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.51 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.92 | MC |
| SRR358795 | callus | wt | 2.07 | MC |
| SRR5560729 | caryopsis | wild_type | 0.57 | MC |
| SRR4947495 | root | control | 1.66 | MC |
| SRR7265400 | coleoptile | 2dA | 1.69 | MC |
| SRR7265401 | coleoptile | 2dA | 1.96 | MC |
| SRR7265402 | coleoptile | 2dA | 2.19 | MC |
| SRR7265403 | coleoptile | 2dN | 4.34 | MC |
| SRR7265405 | coleoptile | 2dN | 3.66 | MC |
| SRR7265407 | coleoptile | 3dA | 2.27 | MC |
| SRR7265408 | coleoptile | 3dA | 1.81 | MC |
| SRR7265412 | coleoptile | 4dA | 1.26 | MC |
| SRR7265413 | coleoptile | 4dA | 2.95 | MC |
| SRR7265414 | coleoptile | 4dA | 1.68 | MC |
| SRR7265416 | coleoptile | 4dN | 3.05 | MC |
| SRR7265417 | coleoptile | 4dN | 3.48 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.01 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.51 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.56 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.61 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.75 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.43 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.25 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.41 | MC |
| SRR7265376 | embryo | 1hA | 2.31 | MC |
| SRR7265377 | embryo | 1hA | 2.34 | MC |
| SRR7265378 | embryo | 1hA | 2.50 | MC |
| SRR7265379 | embryo | 1hN | 1.16 | MC |
| SRR7265380 | embryo | 1hN | 2.25 | MC |
| SRR7265381 | embryo | 1hN | 1.43 | MC |
| SRR7265385 | embryo | 3hN | 3.29 | MC |
| SRR7265386 | embryo | 3hN | 2.74 | MC |
| SRR7265387 | embryo | 3hN | 2.68 | MC |
| SRR7265388 | embryo | 12hA | 2.65 | MC |
| SRR7265389 | embryo | 12hA | 2.25 | MC |
| SRR7265390 | embryo | 12hA | 2.58 | MC |
| SRR7265391 | embryo | 12hN | 3.76 | MC |
| SRR7265392 | embryo | 12hN | 1.90 | MC |
| SRR7265393 | embryo | 12hN | 2.69 | MC |
| SRR7265394 | embryo | 24hA | 4.23 | MC |
| SRR7265395 | embryo | 24hA | 1.65 | MC |
| SRR7265396 | embryo | 24hA | 3.15 | MC |
| SRR7265397 | embryo | 24hN | 3.10 | MC |
| SRR7265398 | embryo | 24hN | 2.56 | MC |
| SRR7265399 | embryo | 24hN | 2.36 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.39 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.42 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.76 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.66 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.36 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.05 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.32 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.36 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.87 | MC |
| SRR8060835 | leaf | wild_type | 0.20 | MC |
| SRR8060836 | leaf | wild_type | 0.41 | MC |
| SRR8060837 | leaf | wild_type | 0.19 | MC |
| SRR8240824 | leaf | wild_type | 0.79 | MC |
| SRR8240825 | leaf | wild_type | 0.59 | MC |
| SRR8240818 | leaf | wild_type | 0.69 | MC |
| SRR8240819 | leaf | wild_type | 0.45 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.50 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.36 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.89 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.39 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.14 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 6.10 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.61 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.02 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.58 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.52 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.57 | MC |
| SRR504365 | leaf | wt | 0.24 | MC |
| SRR6417967 | leaf | H2O_control | 1.69 | MC |
| SRR6417968 | leaf | H2O_control | 2.11 | MC |
| SRR6417969 | leaf | H2O_control | 0.45 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.40 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.99 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.20 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.31 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.37 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.27 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.39 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.75 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.60 | MC |
| SRR1213692 | leaf | wt | 0.50 | MC |
| SRR1213693 | leaf | wt | 0.36 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.65 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.04 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.82 | MC |
| SRR6502088 | leaf | control | 3.66 | MC |
| SRR6502090 | leaf | control | 2.77 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.05 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.46 | MC |
| SRR5856927 | leaf | control | 0.57 | MC |
| SRR5856928 | leaf | control | 0.39 | MC |
| SRR5856929 | leaf | control | 0.71 | MC |
| SRR5856931 | leaf | salt | 0.36 | MC |
| SRR5856933 | leaf | control | 1.37 | MC |
| SRR5856934 | leaf | control | 0.71 | MC |
| SRR5856935 | leaf | control | 0.75 | MC |
| SRR5856936 | leaf | salt | 0.27 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.53 | MC |
| SRR8582893 | panicle | PM | 3.74 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.60 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.84 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.25 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.01 | MC |
| SRR1633182 | panicle | WT | 1.95 | MC |
| SRR1633185 | panicle | WT | 3.06 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.29 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.49 | MC |
| SRR5126153 | root | "mock,7_days" | 0.34 | MC |
| SRR5126155 | root | "mock,7_days" | 0.31 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.50 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.41 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.87 | MC |
| SRR1213695 | root | wt | 2.14 | MC |
| SRR4947478 | root | control | 0.61 | MC |
| SRR4947479 | root | control | 0.99 | MC |
| SRR4947480 | root | control | 2.19 | MC |
| SRR4947482 | root | Al | 2.77 | MC |
| SRR4947483 | root | Al | 3.34 | MC |
| SRR4947484 | root | Al | 3.37 | MC |
| SRR4947485 | root | Al | 2.51 | MC |
| SRR4947487 | root | control | 1.70 | MC |
| SRR4947488 | root | control | 4.02 | MC |
| SRR4947489 | root | control | 4.65 | MC |
| SRR4947491 | root | Al | 2.23 | MC |
| SRR4947492 | root | Al | 4.58 | MC |
| SRR4947493 | root | Al | 3.16 | MC |
| SRR4947494 | root | control | 2.76 | MC |
| SRR4947497 | root | control | 5.63 | MC |
| SRR4947498 | root | Al | 2.50 | MC |
| SRR4947499 | root | Al | 3.73 | MC |
| SRR4947500 | root | Al | 5.16 | MC |
| SRR4947503 | root | control | 4.17 | MC |
| SRR4947505 | root | control | 4.62 | MC |
| SRR4947506 | root | Al | 1.63 | MC |
| SRR4947507 | root | Al | 1.89 | MC |
| SRR4947509 | root | Al | 4.81 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.11 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.06 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.29 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.67 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.09 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.60 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.52 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.64 | MC |
| SRR6441554 | seedling | wild_type | 0.68 | MC |
| SRR6441555 | seedling | wild_type | 1.07 | MC |
| SRR2154086 | seedling | wt | 3.98 | MC |
| SRR2154083 | seedling | wt | 3.43 | MC |
| SRR3098741 | seedling | wt | 0.97 | MC |
| SRR3098742 | seedling | wt | 0.75 | MC |
| SRR3098743 | seedling | wt | 1.00 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.95 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.36 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.38 | MC |
| SRR1944583 | seedling | no_treatment | 0.60 | MC |
| SRR358791 | seedling | wt | 1.28 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.96 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.86 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.24 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.90 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.99 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.69 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.22 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.03 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.28 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.57 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.98 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.95 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.09 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.46 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.56 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.69 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.49 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.85 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.76 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.98 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.11 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.17 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.51 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.59 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.60 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.71 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.86 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.58 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.47 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.47 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.13 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.56 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.38 | MC |