| SRR4457252 | 2nd_leaf | DAH12 | 1.32 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.71 | MC |
| SRR358797 | callus | wt | 0.94 | MC |
| SRR358798 | callus | wt | 1.08 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR7265400 | coleoptile | 2dA | 0.65 | MC |
| SRR7265401 | coleoptile | 2dA | 0.53 | MC |
| SRR7265402 | coleoptile | 2dA | 0.48 | MC |
| SRR7265404 | coleoptile | 2dN | 0.37 | MC |
| SRR7265405 | coleoptile | 2dN | 0.32 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.33 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.70 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.77 | MC |
| SRR7265379 | embryo | 1hN | 0.25 | MC |
| SRR7265388 | embryo | 12hA | 0.83 | MC |
| SRR7265389 | embryo | 12hA | 0.59 | MC |
| SRR7265390 | embryo | 12hA | 0.44 | MC |
| SRR7265392 | embryo | 12hN | 0.53 | MC |
| SRR7265393 | embryo | 12hN | 0.52 | MC |
| SRR7265395 | embryo | 24hA | 0.84 | MC |
| SRR7265396 | embryo | 24hA | 0.61 | MC |
| SRR7265399 | embryo | 24hN | 0.50 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.71 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.98 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.44 | MC |
| SRR8060836 | leaf | wild_type | 1.94 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.26 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.44 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.71 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.19 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.65 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.43 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.35 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.67 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.37 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.32 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.43 | MC |
| SRR504365 | leaf | wt | 0.51 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.38 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.30 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.50 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.69 | MC |
| SRR1213693 | leaf | wt | 0.31 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.87 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.91 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.13 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.60 | MC |
| SRR6502102 | leaf | control | 1.62 | MC |
| SRR8582888 | panicle | AM | 0.75 | MC |
| SRR8582889 | panicle | AM | 1.60 | MC |
| SRR8582890 | panicle | AM | 0.21 | MC |
| SRR8582891 | panicle | PM | 1.26 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.76 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.53 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.60 | MC |
| SRR5110448 | panicle | Dusk | 1.12 | MC |
| SRR1633182 | panicle | WT | 1.75 | MC |
| SRR1633185 | panicle | WT | 2.60 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.27 | MC |
| SRR5126147 | root | "mock,1_day" | 0.47 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126153 | root | "mock,7_days" | 0.32 | MC |
| SRR5126155 | root | "mock,7_days" | 0.28 | MC |
| SRR5126157 | root | "mock,7_days" | 0.65 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.92 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.98 | MC |
| SRR5126165 | root | "mock,14_days" | 0.43 | MC |
| SRR5126167 | root | "mock,14_days" | 0.38 | MC |
| SRR5126169 | root | "mock,14_days" | 0.34 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.92 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.81 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.82 | MC |
| SRR1213695 | root | wt | 0.29 | MC |
| SRR4947478 | root | control | 0.92 | MC |
| SRR4947479 | root | control | 0.85 | MC |
| SRR4947483 | root | Al | 1.25 | MC |
| SRR4947494 | root | control | 0.71 | MC |
| SRR4947499 | root | Al | 1.01 | MC |
| SRR4947502 | root | control | 0.69 | MC |
| SRR4947503 | root | control | 0.77 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.45 | MC |
| SRR6502094 | root | control | 0.55 | MC |
| SRR6502095 | root | control | 0.46 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.57 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.56 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.58 | MC |
| SRR6502107 | root | control | 0.82 | MC |
| SRR6502108 | root | control | 0.85 | MC |
| SRR2154086 | seedling | wt | 0.37 | MC |
| SRR2154084 | seedling | wt | 0.50 | MC |
| SRR2154085 | seedling | wt | 0.64 | MC |
| SRR3098742 | seedling | wt | 0.62 | MC |
| SRR3098743 | seedling | wt | 0.61 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.25 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 4.46 | MC |
| SRR358793 | seedling | wt | 5.43 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.81 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.62 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.77 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.31 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.37 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.66 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.62 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.09 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.63 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.39 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.81 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.85 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.13 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.04 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.17 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.29 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.19 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.03 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.87 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.73 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.76 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.91 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.72 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.28 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.02 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.91 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.26 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.82 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.41 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.68 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.88 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.04 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.36 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.20 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.58 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.16 | MC |