| SRR4457249 | 2nd_leaf | DAH4 | 1.26 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.42 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.32 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.30 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.25 | MC |
| SRR5560729 | caryopsis | wild_type | 0.60 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.25 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.39 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.77 | MC |
| SRR7265400 | coleoptile | 2dA | 1.22 | MC |
| SRR7265401 | coleoptile | 2dA | 1.13 | MC |
| SRR7265402 | coleoptile | 2dA | 1.60 | MC |
| SRR7265406 | coleoptile | 3dA | 0.46 | MC |
| SRR7265407 | coleoptile | 3dA | 0.83 | MC |
| SRR7265414 | coleoptile | 4dA | 0.55 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.22 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.51 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.21 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.97 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.93 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.21 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.20 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.05 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.87 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.79 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.98 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.38 | MC |
| SRR7265380 | embryo | 1hN | 0.38 | MC |
| SRR7265386 | embryo | 3hN | 0.34 | MC |
| SRR7265387 | embryo | 3hN | 0.38 | MC |
| SRR7265389 | embryo | 12hA | 0.53 | MC |
| SRR7265390 | embryo | 12hA | 0.95 | MC |
| SRR7265395 | embryo | 24hA | 0.76 | MC |
| SRR7265396 | embryo | 24hA | 0.83 | MC |
| SRR7265399 | embryo | 24hN | 0.60 | MC |
| SRR2338867 | endosprem | control | 0.50 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.49 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.20 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.38 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.34 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.41 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.70 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.39 | MC |
| SRR1213691 | flower | wt | 1.99 | MC |
| SRR8060835 | leaf | wild_type | 0.25 | MC |
| SRR8060836 | leaf | wild_type | 0.84 | MC |
| SRR8060837 | leaf | wild_type | 0.43 | MC |
| SRR8240824 | leaf | wild_type | 1.17 | MC |
| SRR8240825 | leaf | wild_type | 2.31 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.40 | MC |
| SRR6417967 | leaf | H2O_control | 0.61 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.50 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.84 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.27 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.74 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.46 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.86 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.81 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.05 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.28 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.21 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.94 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.71 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.50 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.98 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.04 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.92 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.38 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.05 | MC |
| SRR6502088 | leaf | control | 0.70 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.07 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.24 | MC |
| SRR6502100 | leaf | control | 1.09 | MC |
| SRR6502101 | leaf | control | 1.20 | MC |
| SRR6502102 | leaf | control | 0.97 | MC |
| SRR5856933 | leaf | control | 0.20 | MC |
| SRR5856936 | leaf | salt | 0.25 | MC |
| SRR5856937 | leaf | salt | 0.42 | MC |
| SRR6168974 | leaf | none (control) | 1.48 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.75 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.96 | MC |
| SRR8582888 | panicle | AM | 0.44 | MC |
| SRR8582889 | panicle | AM | 0.23 | MC |
| SRR8582890 | panicle | AM | 0.62 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.72 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.48 | MC |
| SRR5110445 | panicle | Dusk | 0.75 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.25 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.55 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.19 | MC |
| SRR5126147 | root | "mock,1_day" | 1.64 | MC |
| SRR5126148 | root | "mock,1_day" | 1.59 | MC |
| SRR5126149 | root | "mock,1_day" | 1.70 | MC |
| SRR5126153 | root | "mock,7_days" | 2.51 | MC |
| SRR5126155 | root | "mock,7_days" | 1.89 | MC |
| SRR5126157 | root | "mock,7_days" | 0.52 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.57 | MC |
| SRR5126165 | root | "mock,14_days" | 1.09 | MC |
| SRR5126167 | root | "mock,14_days" | 0.68 | MC |
| SRR5126169 | root | "mock,14_days" | 1.57 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.40 | MC |
| SRR1213694 | root | wt | 0.24 | MC |
| SRR4947482 | root | Al | 0.89 | MC |
| SRR4947490 | root | Al | 0.73 | MC |
| SRR4947491 | root | Al | 1.16 | MC |
| SRR4947500 | root | Al | 0.70 | MC |
| SRR4947508 | root | Al | 1.07 | MC |
| SRR4947509 | root | Al | 1.07 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.80 | MC |
| SRR6502096 | root | control | 0.91 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.39 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.67 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502107 | root | control | 0.30 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.34 | MC |
| SRR6441554 | seedling | wild_type | 1.36 | MC |
| SRR6441555 | seedling | wild_type | 0.89 | MC |
| SRR2154086 | seedling | wt | 2.15 | MC |
| SRR2154082 | seedling | wt | 0.97 | MC |
| SRR2154083 | seedling | wt | 0.97 | MC |
| SRR2154084 | seedling | wt | 0.95 | MC |
| SRR2154085 | seedling | wt | 1.74 | MC |
| SRR2154087 | seedling | wt | 2.25 | MC |
| SRR3098741 | seedling | wt | 2.22 | MC |
| SRR3098742 | seedling | wt | 2.34 | MC |
| SRR3098743 | seedling | wt | 1.58 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.86 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.31 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.93 | MC |
| SRR1944583 | seedling | no_treatment | 0.93 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.02 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.80 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.79 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.63 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.11 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.40 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.64 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.31 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.45 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.50 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.26 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.79 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.84 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.47 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.31 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.93 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.43 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.43 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.00 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.21 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.99 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.30 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.23 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.85 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.85 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.93 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.76 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.83 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.38 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.43 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.42 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.58 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.63 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.45 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.24 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.92 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.47 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.51 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.63 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.65 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.14 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.44 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.29 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.34 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.32 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.43 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.14 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.21 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.59 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.11 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.74 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.78 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.04 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.16 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.94 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.49 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.20 | MC |