| SRR4457249 | 2nd_leaf | DAH4 | 3.57 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.17 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.99 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.50 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.50 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.09 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.87 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.45 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.77 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.12 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.71 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.32 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.85 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.21 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 5.16 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.66 | MC |
| SRR3745127 | anther | wt | 0.83 | MC |
| SRR358795 | callus | wt | 1.86 | MC |
| SRR358796 | callus | wt | 2.42 | MC |
| SRR358797 | callus | wt | 1.72 | MC |
| SRR7265403 | coleoptile | 2dN | 0.36 | MC |
| SRR7265404 | coleoptile | 2dN | 1.17 | MC |
| SRR7265405 | coleoptile | 2dN | 1.06 | MC |
| SRR7265407 | coleoptile | 3dA | 0.24 | MC |
| SRR7265410 | coleoptile | 3dN | 1.14 | MC |
| SRR7265411 | coleoptile | 3dN | 0.95 | MC |
| SRR7265416 | coleoptile | 4dN | 0.82 | MC |
| SRR7265417 | coleoptile | 4dN | 0.55 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.72 | MC |
| SRR7265379 | embryo | 1hN | 0.25 | MC |
| SRR7265381 | embryo | 1hN | 0.28 | MC |
| SRR7265387 | embryo | 3hN | 0.24 | MC |
| SRR7265390 | embryo | 12hA | 0.58 | MC |
| SRR7265391 | embryo | 12hN | 0.52 | MC |
| SRR7265392 | embryo | 12hN | 1.28 | MC |
| SRR7265393 | embryo | 12hN | 1.32 | MC |
| SRR7265395 | embryo | 24hA | 0.48 | MC |
| SRR7265396 | embryo | 24hA | 0.62 | MC |
| SRR7265398 | embryo | 24hN | 1.12 | MC |
| SRR7265399 | embryo | 24hN | 0.97 | MC |
| SRR2338867 | endosprem | control | 0.42 | MC |
| SRR2338868 | endosprem | high_temperature | 1.67 | MC |
| SRR2338869 | endosprem | high_temperature | 2.53 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.71 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.77 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.94 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.15 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.10 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.08 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.79 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.13 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.30 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.66 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.60 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.98 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.36 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.29 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.56 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.68 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.36 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.80 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.50 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.51 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.45 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.01 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.56 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.77 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.28 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.89 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.41 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.01 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.92 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.04 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.27 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.54 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.74 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.73 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.67 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.67 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.40 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.82 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.52 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.22 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.64 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.45 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.94 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 5.39 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.04 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.68 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 5.39 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.04 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.68 | MC |
| SRR1761528 | leaf | drought | 5.39 | MC |
| SRR1761529 | leaf | drought | 5.04 | MC |
| SRR1761531 | leaf | control | 4.68 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.13 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.66 | MC |
| SRR6417967 | leaf | H2O_control | 3.33 | MC |
| SRR6417968 | leaf | H2O_control | 2.09 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.78 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.95 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.63 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.57 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.77 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.13 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.38 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.93 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 3.11 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.31 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.09 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.94 | MC |
| SRR6168979 | leaf | none (control) | 0.90 | MC |
| SRR6168980 | leaf | none (control) | 0.90 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.91 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.27 | MC |
| SRR5126147 | root | "mock,1_day" | 2.10 | MC |
| SRR5126148 | root | "mock,1_day" | 1.64 | MC |
| SRR5126149 | root | "mock,1_day" | 2.17 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.34 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.24 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.71 | MC |
| SRR5126153 | root | "mock,7_days" | 1.75 | MC |
| SRR5126155 | root | "mock,7_days" | 4.03 | MC |
| SRR5126157 | root | "mock,7_days" | 3.71 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.83 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.06 | MC |
| SRR5126165 | root | "mock,14_days" | 1.09 | MC |
| SRR5126167 | root | "mock,14_days" | 2.67 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.28 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.34 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.03 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.71 | MC |
| SRR1213694 | root | wt | 2.37 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.61 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.04 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.92 | MC |
| SRR6502094 | root | control | 3.78 | MC |
| SRR6502095 | root | control | 2.52 | MC |
| SRR6502096 | root | control | 1.89 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.85 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.46 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.06 | MC |
| SRR6502106 | root | control | 2.96 | MC |
| SRR6502107 | root | control | 3.13 | MC |
| SRR6502108 | root | control | 2.07 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.06 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.59 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.61 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.72 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.52 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.04 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.56 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.40 | MC |
| SRR358793 | seedling | wt | 5.62 | MC |
| SRR358794 | seedling | wt | 5.99 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.86 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 9.29 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 9.01 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 13.04 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.94 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.32 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.36 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.32 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.67 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 6.79 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.57 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.01 | MC |