| SRR5560728 | caryopsis | wild_type | 0.52 | MC |
| SRR5560729 | caryopsis | wild_type | 1.10 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.82 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.24 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.73 | MC |
| SRR2338867 | endosprem | control | 0.44 | MC |
| SRR2338868 | endosprem | high_temperature | 1.63 | MC |
| SRR2338869 | endosprem | high_temperature | 2.14 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.45 | MC |
| SRR1213691 | flower | wt | 1.90 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.40 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.46 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.38 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.93 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.86 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.87 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.94 | MC |
| SRR6168973 | leaf | none (control) | 1.20 | MC |
| SRR4947496 | root | control | 1.70 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.27 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.39 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.84 | MC |
| SRR5126147 | root | "mock,1_day" | 1.14 | MC |
| SRR5126148 | root | "mock,1_day" | 2.08 | MC |
| SRR5126149 | root | "mock,1_day" | 0.79 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.64 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.39 | MC |
| SRR5126153 | root | "mock,7_days" | 1.85 | MC |
| SRR5126155 | root | "mock,7_days" | 1.29 | MC |
| SRR5126157 | root | "mock,7_days" | 1.99 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.66 | MC |
| SRR5126165 | root | "mock,14_days" | 0.78 | MC |
| SRR5126167 | root | "mock,14_days" | 1.24 | MC |
| SRR5126169 | root | "mock,14_days" | 1.97 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.80 | MC |
| SRR4947480 | root | control | 1.27 | MC |
| SRR4947481 | root | control | 1.31 | MC |
| SRR4947484 | root | Al | 0.53 | MC |
| SRR4947488 | root | control | 0.88 | MC |
| SRR4947489 | root | control | 1.18 | MC |
| SRR4947492 | root | Al | 2.00 | MC |
| SRR4947493 | root | Al | 1.63 | MC |
| SRR4947497 | root | control | 0.75 | MC |
| SRR4947500 | root | Al | 2.38 | MC |
| SRR4947501 | root | Al | 1.05 | MC |
| SRR4947504 | root | control | 1.14 | MC |
| SRR4947505 | root | control | 0.70 | MC |
| SRR4947508 | root | Al | 1.63 | MC |
| SRR4947509 | root | Al | 1.88 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.05 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.47 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.65 | MC |
| SRR6502094 | root | control | 2.06 | MC |
| SRR6502095 | root | control | 1.29 | MC |
| SRR6502096 | root | control | 0.67 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.78 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.00 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.95 | MC |
| SRR6502106 | root | control | 1.90 | MC |
| SRR6502107 | root | control | 1.92 | MC |
| SRR6502108 | root | control | 1.37 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.95 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.24 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.49 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.54 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.23 | MC |
| SRR6441554 | seedling | wild_type | 0.52 | MC |
| SRR3098741 | seedling | wt | 0.25 | MC |
| SRR3098742 | seedling | wt | 0.55 | MC |
| SRR3098743 | seedling | wt | 0.24 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.43 | MC |
| SRR1944583 | seedling | no_treatment | 0.82 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.02 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.95 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.79 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.92 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.83 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.41 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.94 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.83 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.94 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.39 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.46 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.40 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.46 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.70 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.41 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.28 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.47 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.36 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.50 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.23 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.11 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.17 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.78 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.62 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.32 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.04 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.87 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.63 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.82 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.19 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.61 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.22 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.33 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.82 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.88 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.48 | MC |