| SRR4457249 | 2nd_leaf | DAH4 | 1.64 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.64 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.05 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.68 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.24 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.86 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.47 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.64 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.29 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.39 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.96 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.15 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.62 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.82 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.59 | MC |
| SRR976168 | flag_leaf | wild_type | 1.80 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.91 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.80 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.30 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.38 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.08 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.77 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.54 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.62 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.78 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.34 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.97 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.14 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.95 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.97 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.42 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.40 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.00 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.66 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.03 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.87 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.48 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.41 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.20 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.80 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.74 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.07 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.48 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.80 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.28 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.69 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.28 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.54 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.50 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.95 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.48 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.45 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.69 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.43 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.62 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.40 | MC |
| SRR1761530 | leaf | control | 1.57 | MC |
| SRR1761531 | leaf | control | 1.40 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.42 | MC |
| SRR6417967 | leaf | H2O_control | 0.61 | MC |
| SRR6417968 | leaf | H2O_control | 1.00 | MC |
| SRR6417969 | leaf | H2O_control | 0.75 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.13 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.76 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.38 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.35 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.84 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.64 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.45 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.47 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.18 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.58 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.51 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.97 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.40 | MC |
| SRR6502088 | leaf | control | 0.92 | MC |
| SRR6502089 | leaf | control | 0.52 | MC |
| SRR6502090 | leaf | control | 0.61 | MC |
| SRR5856927 | leaf | control | 1.18 | MC |
| SRR5856928 | leaf | control | 1.29 | MC |
| SRR5856929 | leaf | control | 1.31 | MC |
| SRR5856930 | leaf | salt | 0.96 | MC |
| SRR5856931 | leaf | salt | 1.31 | MC |
| SRR5856932 | leaf | salt | 1.08 | MC |
| SRR5856933 | leaf | control | 1.50 | MC |
| SRR5856934 | leaf | control | 1.28 | MC |
| SRR5856935 | leaf | control | 1.33 | MC |
| SRR5856936 | leaf | salt | 0.95 | MC |
| SRR5856937 | leaf | salt | 0.93 | MC |
| SRR5856938 | leaf | salt | 1.12 | MC |
| SRR8582888 | panicle | AM | 1.88 | MC |
| SRR8582889 | panicle | AM | 0.86 | MC |
| SRR8582890 | panicle | AM | 1.37 | MC |
| SRR1213695 | root | wt | 0.49 | MC |
| SRR2154087 | seedling | wt | 0.53 | MC |
| SRR3098741 | seedling | wt | 0.66 | MC |
| SRR3098742 | seedling | wt | 0.65 | MC |
| SRR3098743 | seedling | wt | 0.46 | MC |
| SRR1944583 | seedling | no_treatment | 0.82 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.01 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.58 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.52 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.70 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.75 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.41 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.44 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.44 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.90 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.83 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.71 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.48 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.66 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.36 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.00 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.56 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.42 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.75 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.38 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.34 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.31 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.04 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.32 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.41 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.38 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.38 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.71 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.85 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.64 | MC |