| SRR4457266 | 2nd_leaf | DAH44 | 0.94 | MC |
| SRR5560727 | caryopsis | wild_type | 0.61 | MC |
| SRR5560729 | caryopsis | wild_type | 0.55 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.41 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.06 | MC |
| SRR4947495 | root | control | 4.28 | MC |
| SRR7265403 | coleoptile | 2dN | 3.25 | MC |
| SRR7265404 | coleoptile | 2dN | 2.89 | MC |
| SRR7265405 | coleoptile | 2dN | 2.90 | MC |
| SRR7265408 | coleoptile | 3dA | 2.38 | MC |
| SRR7265409 | coleoptile | 3dN | 2.95 | MC |
| SRR7265410 | coleoptile | 3dN | 2.19 | MC |
| SRR7265411 | coleoptile | 3dN | 2.93 | MC |
| SRR7265415 | coleoptile | 4dN | 2.54 | MC |
| SRR7265416 | coleoptile | 4dN | 2.01 | MC |
| SRR7265417 | coleoptile | 4dN | 1.91 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.80 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.21 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.94 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.94 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.79 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.18 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.25 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.34 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.44 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.04 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.16 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.97 | MC |
| SRR7265388 | embryo | 12hA | 1.00 | MC |
| SRR7265389 | embryo | 12hA | 1.72 | MC |
| SRR7265390 | embryo | 12hA | 1.83 | MC |
| SRR7265391 | embryo | 12hN | 0.82 | MC |
| SRR7265392 | embryo | 12hN | 1.15 | MC |
| SRR7265393 | embryo | 12hN | 1.96 | MC |
| SRR7265394 | embryo | 24hA | 5.03 | MC |
| SRR7265395 | embryo | 24hA | 3.56 | MC |
| SRR7265397 | embryo | 24hN | 0.91 | MC |
| SRR7265398 | embryo | 24hN | 2.31 | MC |
| SRR7265399 | embryo | 24hN | 1.09 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.21 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.86 | MC |
| SRR1213691 | flower | wt | 0.96 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.36 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.29 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.49 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.11 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.59 | MC |
| SRR5856927 | leaf | control | 0.52 | MC |
| SRR5856928 | leaf | control | 1.67 | MC |
| SRR5856929 | leaf | control | 1.13 | MC |
| SRR5856930 | leaf | salt | 1.06 | MC |
| SRR5856931 | leaf | salt | 0.79 | MC |
| SRR5856932 | leaf | salt | 1.14 | MC |
| SRR5856933 | leaf | control | 1.05 | MC |
| SRR5856934 | leaf | control | 1.05 | MC |
| SRR5856935 | leaf | control | 1.61 | MC |
| SRR5856936 | leaf | salt | 0.86 | MC |
| SRR5856937 | leaf | salt | 1.33 | MC |
| SRR6168974 | leaf | none (control) | 2.43 | MC |
| SRR6168975 | leaf | none (control) | 0.68 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.22 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.54 | MC |
| SRR6168981 | leaf | none (control) | 0.63 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.52 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.77 | MC |
| SRR8582889 | panicle | AM | 0.15 | MC |
| SRR5110429 | panicle | Dawn | 1.11 | MC |
| SRR5110431 | panicle | Dawn | 0.75 | MC |
| SRR4947496 | root | control | 3.50 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.33 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.86 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.19 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.03 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.12 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.21 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.33 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.99 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.69 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.72 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.51 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.66 | MC |
| SRR5126147 | root | "mock,1_day" | 1.42 | MC |
| SRR5126148 | root | "mock,1_day" | 1.52 | MC |
| SRR5126149 | root | "mock,1_day" | 1.30 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.65 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.15 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.82 | MC |
| SRR5126153 | root | "mock,7_days" | 3.46 | MC |
| SRR5126155 | root | "mock,7_days" | 2.47 | MC |
| SRR5126157 | root | "mock,7_days" | 2.97 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.90 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.02 | MC |
| SRR5126165 | root | "mock,14_days" | 3.76 | MC |
| SRR5126167 | root | "mock,14_days" | 0.89 | MC |
| SRR5126169 | root | "mock,14_days" | 2.17 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.81 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.17 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.78 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.16 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.02 | MC |
| SRR1213694 | root | wt | 2.22 | MC |
| SRR4947478 | root | control | 2.91 | MC |
| SRR4947479 | root | control | 1.65 | MC |
| SRR4947480 | root | control | 3.00 | MC |
| SRR4947481 | root | control | 3.76 | MC |
| SRR4947483 | root | Al | 2.11 | MC |
| SRR4947484 | root | Al | 2.20 | MC |
| SRR4947485 | root | Al | 1.64 | MC |
| SRR4947488 | root | control | 2.58 | MC |
| SRR4947489 | root | control | 2.32 | MC |
| SRR4947491 | root | Al | 4.52 | MC |
| SRR4947492 | root | Al | 2.22 | MC |
| SRR4947493 | root | Al | 3.98 | MC |
| SRR4947497 | root | control | 5.16 | MC |
| SRR4947500 | root | Al | 4.68 | MC |
| SRR4947501 | root | Al | 6.10 | MC |
| SRR4947503 | root | control | 4.64 | MC |
| SRR4947504 | root | control | 3.35 | MC |
| SRR4947505 | root | control | 4.77 | MC |
| SRR4947506 | root | Al | 2.95 | MC |
| SRR4947507 | root | Al | 4.25 | MC |
| SRR4947508 | root | Al | 3.71 | MC |
| SRR4947509 | root | Al | 2.05 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.51 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.91 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.24 | MC |
| SRR6502094 | root | control | 2.19 | MC |
| SRR6502095 | root | control | 3.25 | MC |
| SRR6502096 | root | control | 3.34 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.73 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.55 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.66 | MC |
| SRR6502106 | root | control | 2.02 | MC |
| SRR6502107 | root | control | 1.87 | MC |
| SRR6502108 | root | control | 2.92 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.65 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.04 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.80 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.47 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.94 | MC |
| SRR2154086 | seedling | wt | 0.90 | MC |
| SRR2154082 | seedling | wt | 1.48 | MC |
| SRR2154083 | seedling | wt | 1.49 | MC |
| SRR2154084 | seedling | wt | 1.67 | MC |
| SRR2154085 | seedling | wt | 2.57 | MC |
| SRR2154087 | seedling | wt | 1.83 | MC |
| SRR3098741 | seedling | wt | 0.39 | MC |
| SRR3098742 | seedling | wt | 0.67 | MC |
| SRR3098743 | seedling | wt | 0.32 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.66 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.78 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.02 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.80 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.17 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.32 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.51 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.80 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.32 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.65 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.75 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.35 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.06 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.77 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.76 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.83 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.47 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.38 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.56 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |