| SRR4457253 | 2nd_leaf | DAH12 | 0.62 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.54 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.56 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.62 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.48 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.39 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.86 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.56 | MC |
| SRR5560728 | caryopsis | wild_type | 1.77 | MC |
| SRR5560729 | caryopsis | wild_type | 1.61 | MC |
| SRR7265400 | coleoptile | 2dA | 0.39 | MC |
| SRR7265410 | coleoptile | 3dN | 1.39 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.05 | MC |
| SRR7265379 | embryo | 1hN | 1.24 | MC |
| SRR2338868 | endosprem | high_temperature | 0.62 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.63 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.46 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.48 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.34 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.76 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.04 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.40 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.58 | MC |
| SRR8060836 | leaf | wild_type | 0.23 | MC |
| SRR8240825 | leaf | wild_type | 2.28 | MC |
| SRR8240826 | leaf | wild_type | 0.60 | MC |
| SRR8240820 | leaf | wild_type | 1.21 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.52 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.68 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.02 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.99 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.94 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.89 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.37 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.66 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.30 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.49 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.48 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.50 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.04 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.36 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.63 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.83 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.29 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.87 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.78 | MC |
| SRR6417969 | leaf | H2O_control | 3.37 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.73 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.28 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.60 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.25 | MC |
| SRR1213692 | leaf | wt | 1.09 | MC |
| SRR1213693 | leaf | wt | 0.94 | MC |
| SRR6502090 | leaf | control | 1.33 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.06 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.89 | MC |
| SRR6502101 | leaf | control | 2.04 | MC |
| SRR5856938 | leaf | salt | 0.18 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.69 | MC |
| SRR6168974 | leaf | none (control) | 0.41 | MC |
| SRR6168975 | leaf | none (control) | 1.02 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 6.55 | MC |
| SRR6168981 | leaf | none (control) | 0.46 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.22 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.66 | MC |
| SRR8582888 | panicle | AM | 1.93 | MC |
| SRR8582889 | panicle | AM | 0.43 | MC |
| SRR4947496 | root | control | 4.41 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.28 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.34 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.46 | MC |
| SRR5126147 | root | "mock,1_day" | 0.53 | MC |
| SRR5126148 | root | "mock,1_day" | 0.53 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.41 | MC |
| SRR5126153 | root | "mock,7_days" | 2.27 | MC |
| SRR5126155 | root | "mock,7_days" | 0.72 | MC |
| SRR5126157 | root | "mock,7_days" | 0.74 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.40 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.15 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.42 | MC |
| SRR5126167 | root | "mock,14_days" | 0.76 | MC |
| SRR5126169 | root | "mock,14_days" | 2.43 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.10 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.32 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.40 | MC |
| SRR1213695 | root | wt | 0.25 | MC |
| SRR4947478 | root | control | 0.90 | MC |
| SRR4947481 | root | control | 5.48 | MC |
| SRR4947482 | root | Al | 2.46 | MC |
| SRR4947484 | root | Al | 3.39 | MC |
| SRR4947491 | root | Al | 0.62 | MC |
| SRR4947505 | root | control | 3.17 | MC |
| SRR4947509 | root | Al | 4.72 | MC |
| SRR6441554 | seedling | wild_type | 1.28 | MC |
| SRR6441555 | seedling | wild_type | 0.61 | MC |
| SRR2154086 | seedling | wt | 0.84 | MC |
| SRR2154085 | seedling | wt | 3.24 | MC |
| SRR2154087 | seedling | wt | 2.68 | MC |
| SRR3098741 | seedling | wt | 0.42 | MC |
| SRR3098742 | seedling | wt | 0.54 | MC |
| SRR3098743 | seedling | wt | 0.33 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.57 | MC |
| SRR358793 | seedling | wt | 1.25 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.86 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.80 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.83 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.84 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.02 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.41 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.13 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.66 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.22 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.29 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.15 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.53 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.84 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.64 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.70 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.90 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.68 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.92 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.70 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.97 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.33 | MC |