| SRR4457252 | 2nd_leaf | DAH12 | 2.41 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.94 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.86 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.92 | MC |
| SRR3745125 | anther | wt | 1.29 | MC |
| SRR3745126 | anther | wt | 0.90 | MC |
| SRR358795 | callus | wt | 7.81 | MC |
| SRR358797 | callus | wt | 7.82 | MC |
| SRR358798 | callus | wt | 9.12 | MC |
| SRR6320498 | carpel | wt | 5.31 | MC |
| SRR5560728 | caryopsis | wild_type | 2.11 | MC |
| SRR5560729 | caryopsis | wild_type | 0.84 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.50 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.52 | MC |
| SRR7265415 | coleoptile | 4dN | 4.01 | MC |
| SRR7265416 | coleoptile | 4dN | 3.43 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.93 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.60 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.48 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.32 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.49 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.48 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.62 | MC |
| SRR7265377 | embryo | 1hA | 3.45 | MC |
| SRR7265379 | embryo | 1hN | 2.58 | MC |
| SRR7265390 | embryo | 12hA | 4.37 | MC |
| SRR7265391 | embryo | 12hN | 4.28 | MC |
| SRR7265392 | embryo | 12hN | 2.67 | MC |
| SRR7265394 | embryo | 24hA | 3.27 | MC |
| SRR7265399 | embryo | 24hN | 3.48 | MC |
| SRR2338867 | endosprem | control | 0.47 | MC |
| SRR2338868 | endosprem | high_temperature | 1.35 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.98 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.11 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.85 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.79 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.22 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.01 | MC |
| SRR1213691 | flower | wt | 1.00 | MC |
| SRR8240818 | leaf | wild_type | 0.92 | MC |
| SRR8240819 | leaf | wild_type | 1.09 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.22 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.71 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.25 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.03 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.44 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.39 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.79 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.35 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.44 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.70 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.02 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.53 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.60 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.97 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.07 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.35 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.62 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.46 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.57 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.38 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.18 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.50 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.99 | MC |
| SRR504365 | leaf | wt | 2.81 | MC |
| SRR6417967 | leaf | H2O_control | 3.76 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.90 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.77 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.15 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.01 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.61 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.79 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.30 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.57 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.88 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.11 | MC |
| SRR1213692 | leaf | wt | 2.22 | MC |
| SRR1213693 | leaf | wt | 0.97 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.02 | MC |
| SRR6502089 | leaf | control | 1.71 | MC |
| SRR6502090 | leaf | control | 0.95 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.08 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.64 | MC |
| SRR6502101 | leaf | control | 0.67 | MC |
| SRR5856929 | leaf | control | 0.69 | MC |
| SRR5856930 | leaf | salt | 1.16 | MC |
| SRR5856931 | leaf | salt | 0.98 | MC |
| SRR5856932 | leaf | salt | 1.22 | MC |
| SRR5856933 | leaf | control | 0.27 | MC |
| SRR5856936 | leaf | salt | 1.49 | MC |
| SRR5856937 | leaf | salt | 0.87 | MC |
| SRR5856938 | leaf | salt | 1.34 | MC |
| SRR6168974 | leaf | none (control) | 2.79 | MC |
| SRR6168975 | leaf | none (control) | 3.69 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.33 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.95 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.90 | MC |
| SRR8582888 | panicle | AM | 0.61 | MC |
| SRR8582889 | panicle | AM | 0.65 | MC |
| SRR8582890 | panicle | AM | 1.67 | MC |
| SRR8582891 | panicle | PM | 1.92 | MC |
| SRR8582892 | panicle | PM | 4.44 | MC |
| SRR8582893 | panicle | PM | 2.69 | MC |
| SRR5110429 | panicle | Dawn | 2.21 | MC |
| SRR5110430 | panicle | Dawn | 3.30 | MC |
| SRR5110432 | panicle | Dawn | 0.92 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.43 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.25 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.52 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.99 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.07 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.03 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.43 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.20 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.42 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.96 | MC |
| SRR5110445 | panicle | Dusk | 0.81 | MC |
| SRR5110446 | panicle | Dusk | 3.67 | MC |
| SRR5110447 | panicle | Dusk | 2.37 | MC |
| SRR5110448 | panicle | Dusk | 0.84 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.17 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.58 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.23 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.06 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.39 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.58 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.92 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.57 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.41 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.68 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.37 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.74 | MC |
| SRR5126148 | root | "mock,1_day" | 0.46 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.79 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.64 | MC |
| SRR5126155 | root | "mock,7_days" | 0.74 | MC |
| SRR5126157 | root | "mock,7_days" | 0.83 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.52 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.92 | MC |
| SRR5126169 | root | "mock,14_days" | 0.64 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.10 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.32 | MC |
| SRR1213695 | root | wt | 0.51 | MC |
| SRR4947479 | root | control | 0.47 | MC |
| SRR4947482 | root | Al | 0.68 | MC |
| SRR4947487 | root | control | 0.59 | MC |
| SRR4947489 | root | control | 0.60 | MC |
| SRR4947491 | root | Al | 0.57 | MC |
| SRR4947494 | root | control | 1.08 | MC |
| SRR4947498 | root | Al | 0.63 | MC |
| SRR4947499 | root | Al | 0.53 | MC |
| SRR4947505 | root | control | 0.78 | MC |
| SRR4947507 | root | Al | 0.69 | MC |
| SRR4947508 | root | Al | 0.56 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.57 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.71 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.83 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.12 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.91 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.59 | MC |
| SRR6502106 | root | control | 0.44 | MC |
| SRR6502107 | root | control | 0.58 | MC |
| SRR6502108 | root | control | 0.52 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.76 | MC |
| SRR6441554 | seedling | wild_type | 2.95 | MC |
| SRR6441555 | seedling | wild_type | 1.92 | MC |
| SRR2154086 | seedling | wt | 1.27 | MC |
| SRR2154083 | seedling | wt | 2.62 | MC |
| SRR2154084 | seedling | wt | 3.31 | MC |
| SRR2154085 | seedling | wt | 1.35 | MC |
| SRR2154087 | seedling | wt | 2.59 | MC |
| SRR3098741 | seedling | wt | 1.17 | MC |
| SRR3098742 | seedling | wt | 2.01 | MC |
| SRR3098743 | seedling | wt | 1.01 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.76 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.24 | MC |
| SRR1944583 | seedling | no_treatment | 0.55 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.63 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.57 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.30 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.88 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 3.06 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.78 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 4.08 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.64 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.48 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.69 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.44 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.41 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.31 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.52 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.42 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.49 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.62 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.79 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.32 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.68 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.48 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.83 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.82 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.77 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.96 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.10 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.17 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.46 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.90 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.08 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.78 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.45 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.70 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 6.45 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.92 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.67 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.84 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.19 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.82 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.99 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.84 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.76 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.30 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.47 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.99 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.89 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.28 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.07 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.20 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.88 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.24 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.16 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.67 | MC |