| SRR4457255 | 2nd_leaf | DAH20 | 1.31 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.60 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.07 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.45 | MC |
| SRR5560729 | caryopsis | wild_type | 0.99 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.93 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.95 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.33 | MC |
| SRR7265400 | coleoptile | 2dA | 3.46 | MC |
| SRR7265401 | coleoptile | 2dA | 3.34 | MC |
| SRR7265402 | coleoptile | 2dA | 2.11 | MC |
| SRR7265403 | coleoptile | 2dN | 2.37 | MC |
| SRR7265404 | coleoptile | 2dN | 3.28 | MC |
| SRR7265405 | coleoptile | 2dN | 2.97 | MC |
| SRR7265406 | coleoptile | 3dA | 1.76 | MC |
| SRR7265407 | coleoptile | 3dA | 1.11 | MC |
| SRR7265409 | coleoptile | 3dN | 2.76 | MC |
| SRR7265410 | coleoptile | 3dN | 1.68 | MC |
| SRR7265411 | coleoptile | 3dN | 1.24 | MC |
| SRR7265413 | coleoptile | 4dA | 3.84 | MC |
| SRR7265414 | coleoptile | 4dA | 0.93 | MC |
| SRR7265415 | coleoptile | 4dN | 2.00 | MC |
| SRR7265416 | coleoptile | 4dN | 0.49 | MC |
| SRR7265417 | coleoptile | 4dN | 1.71 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.19 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.81 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.45 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.68 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.19 | MC |
| SRR7265378 | embryo | 1hA | 0.61 | MC |
| SRR7265379 | embryo | 1hN | 1.13 | MC |
| SRR7265381 | embryo | 1hN | 0.97 | MC |
| SRR7265383 | embryo | 3hA | 2.01 | MC |
| SRR7265384 | embryo | 3hA | 1.07 | MC |
| SRR7265385 | embryo | 3hN | 1.24 | MC |
| SRR7265387 | embryo | 3hN | 0.37 | MC |
| SRR7265388 | embryo | 12hA | 1.52 | MC |
| SRR7265389 | embryo | 12hA | 1.64 | MC |
| SRR7265390 | embryo | 12hA | 2.18 | MC |
| SRR7265391 | embryo | 12hN | 2.94 | MC |
| SRR7265392 | embryo | 12hN | 1.92 | MC |
| SRR7265393 | embryo | 12hN | 1.64 | MC |
| SRR7265394 | embryo | 24hA | 0.98 | MC |
| SRR7265395 | embryo | 24hA | 0.77 | MC |
| SRR7265396 | embryo | 24hA | 1.28 | MC |
| SRR7265397 | embryo | 24hN | 3.27 | MC |
| SRR7265398 | embryo | 24hN | 3.54 | MC |
| SRR7265399 | embryo | 24hN | 1.92 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.25 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.51 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.48 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.75 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.96 | MC |
| SRR1213691 | flower | wt | 2.02 | MC |
| SRR8060835 | leaf | wild_type | 0.27 | MC |
| SRR8060836 | leaf | wild_type | 0.34 | MC |
| SRR8060837 | leaf | wild_type | 0.35 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.37 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.45 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.05 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.65 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.99 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.39 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.02 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.58 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.84 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.47 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.41 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.30 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.80 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.61 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.66 | MC |
| SRR504365 | leaf | wt | 1.15 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.42 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.25 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.48 | MC |
| SRR1213692 | leaf | wt | 1.42 | MC |
| SRR1213693 | leaf | wt | 0.59 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.99 | MC |
| SRR5856934 | leaf | control | 0.26 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.98 | MC |
| SRR6168973 | leaf | none (control) | 0.44 | MC |
| SRR6168974 | leaf | none (control) | 0.50 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.44 | MC |
| SRR8582892 | panicle | PM | 0.96 | MC |
| SRR8582893 | panicle | PM | 0.57 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.26 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.44 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.12 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.72 | MC |
| SRR5126147 | root | "mock,1_day" | 0.50 | MC |
| SRR5126149 | root | "mock,1_day" | 0.75 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.78 | MC |
| SRR5126153 | root | "mock,7_days" | 0.99 | MC |
| SRR5126155 | root | "mock,7_days" | 0.44 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.37 | MC |
| SRR5126165 | root | "mock,14_days" | 0.87 | MC |
| SRR5126167 | root | "mock,14_days" | 0.42 | MC |
| SRR5126169 | root | "mock,14_days" | 0.66 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.68 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.35 | MC |
| SRR1213695 | root | wt | 0.76 | MC |
| SRR4947484 | root | Al | 0.70 | MC |
| SRR4947485 | root | Al | 1.07 | MC |
| SRR4947501 | root | Al | 1.94 | MC |
| SRR4947505 | root | control | 0.86 | MC |
| SRR4947509 | root | Al | 0.90 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.37 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.86 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.93 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502107 | root | control | 1.14 | MC |
| SRR6502108 | root | control | 0.74 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.26 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.59 | MC |
| SRR2154086 | seedling | wt | 1.04 | MC |
| SRR2154084 | seedling | wt | 0.28 | MC |
| SRR2154087 | seedling | wt | 1.24 | MC |
| SRR3098741 | seedling | wt | 0.51 | MC |
| SRR3098742 | seedling | wt | 0.18 | MC |
| SRR3098743 | seedling | wt | 0.36 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.64 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.63 | MC |
| SRR358791 | seedling | wt | 1.76 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.37 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.83 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.30 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.35 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.20 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.87 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.63 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.72 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.59 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.61 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.04 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.69 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.74 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.95 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.86 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.42 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.71 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.55 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.43 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.89 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.13 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.23 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.20 | MC |