| SRR4457251 | 2nd_leaf | DAH4 | 0.43 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.42 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.04 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.10 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.80 | MC |
| SRR6320473 | carpel | wt | 3.03 | MC |
| SRR6320498 | carpel | wt | 1.95 | MC |
| SRR5560727 | caryopsis | wild_type | 1.01 | MC |
| SRR5560728 | caryopsis | wild_type | 0.37 | MC |
| SRR5560729 | caryopsis | wild_type | 0.89 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.37 | MC |
| SRR4947495 | root | control | 0.51 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.91 | MC |
| SRR7265400 | coleoptile | 2dA | 2.79 | MC |
| SRR7265401 | coleoptile | 2dA | 2.38 | MC |
| SRR7265402 | coleoptile | 2dA | 2.39 | MC |
| SRR7265403 | coleoptile | 2dN | 0.63 | MC |
| SRR7265407 | coleoptile | 3dA | 0.52 | MC |
| SRR7265412 | coleoptile | 4dA | 0.49 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.74 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.97 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.41 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.65 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.23 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.96 | MC |
| SRR7265377 | embryo | 1hA | 2.67 | MC |
| SRR7265378 | embryo | 1hA | 2.07 | MC |
| SRR7265379 | embryo | 1hN | 1.38 | MC |
| SRR7265380 | embryo | 1hN | 2.07 | MC |
| SRR7265382 | embryo | 3hA | 3.52 | MC |
| SRR7265383 | embryo | 3hA | 2.97 | MC |
| SRR7265384 | embryo | 3hA | 0.66 | MC |
| SRR7265386 | embryo | 3hN | 1.43 | MC |
| SRR7265387 | embryo | 3hN | 1.35 | MC |
| SRR7265388 | embryo | 12hA | 1.52 | MC |
| SRR7265389 | embryo | 12hA | 2.35 | MC |
| SRR7265390 | embryo | 12hA | 2.80 | MC |
| SRR7265391 | embryo | 12hN | 1.10 | MC |
| SRR7265392 | embryo | 12hN | 1.06 | MC |
| SRR7265394 | embryo | 24hA | 2.41 | MC |
| SRR7265395 | embryo | 24hA | 1.09 | MC |
| SRR7265396 | embryo | 24hA | 2.53 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.26 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.32 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.49 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.70 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.60 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.23 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.69 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.36 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.92 | MC |
| SRR8240824 | leaf | wild_type | 1.28 | MC |
| SRR8240825 | leaf | wild_type | 0.30 | MC |
| SRR8240826 | leaf | wild_type | 1.75 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.39 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.07 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.19 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.62 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.64 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.02 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.96 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.08 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.06 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.90 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.13 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.32 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.75 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.37 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.50 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.47 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.26 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.40 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.38 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.62 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.03 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.43 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.90 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.59 | MC |
| SRR6417967 | leaf | H2O_control | 1.47 | MC |
| SRR6417969 | leaf | H2O_control | 1.14 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.76 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.32 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.61 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.36 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.94 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.36 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.86 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.72 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.52 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.90 | MC |
| SRR1213692 | leaf | wt | 1.83 | MC |
| SRR1213693 | leaf | wt | 1.62 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.59 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.79 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.03 | MC |
| SRR6502088 | leaf | control | 0.80 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.51 | MC |
| SRR6502102 | leaf | control | 0.84 | MC |
| SRR5856930 | leaf | salt | 0.90 | MC |
| SRR5856931 | leaf | salt | 0.39 | MC |
| SRR5856932 | leaf | salt | 0.18 | MC |
| SRR5856934 | leaf | control | 1.70 | MC |
| SRR5856935 | leaf | control | 1.13 | MC |
| SRR5856936 | leaf | salt | 0.69 | MC |
| SRR5856937 | leaf | salt | 0.56 | MC |
| SRR5856938 | leaf | salt | 0.20 | MC |
| SRR6168973 | leaf | none (control) | 0.88 | MC |
| SRR6168975 | leaf | none (control) | 0.48 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.61 | MC |
| SRR6168979 | leaf | none (control) | 0.43 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.53 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.07 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.90 | MC |
| SRR8582889 | panicle | AM | 0.15 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.27 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.45 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.72 | MC |
| SRR5126147 | root | "mock,1_day" | 3.87 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.52 | MC |
| SRR5126155 | root | "mock,7_days" | 2.50 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.95 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.53 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.62 | MC |
| SRR5126165 | root | "mock,14_days" | 2.20 | MC |
| SRR5126167 | root | "mock,14_days" | 1.53 | MC |
| SRR5126169 | root | "mock,14_days" | 1.91 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.35 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.04 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.16 | MC |
| SRR1213694 | root | wt | 2.05 | MC |
| SRR1213695 | root | wt | 1.36 | MC |
| SRR4947484 | root | Al | 0.57 | MC |
| SRR4947485 | root | Al | 1.26 | MC |
| SRR4947489 | root | control | 0.57 | MC |
| SRR4947492 | root | Al | 1.23 | MC |
| SRR4947500 | root | Al | 0.95 | MC |
| SRR4947501 | root | Al | 0.99 | MC |
| SRR4947502 | root | control | 1.03 | MC |
| SRR4947509 | root | Al | 0.89 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.36 | MC |
| SRR6502096 | root | control | 1.44 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.63 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.38 | MC |
| SRR6502106 | root | control | 1.48 | MC |
| SRR6502108 | root | control | 1.45 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.02 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.75 | MC |
| SRR6441555 | seedling | wild_type | 2.42 | MC |
| SRR2154084 | seedling | wt | 1.41 | MC |
| SRR2154085 | seedling | wt | 0.93 | MC |
| SRR3098741 | seedling | wt | 0.50 | MC |
| SRR3098742 | seedling | wt | 1.13 | MC |
| SRR3098743 | seedling | wt | 0.75 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.27 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.77 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.34 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.45 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.80 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.06 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.36 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.21 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.98 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.63 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.10 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.97 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.88 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.13 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.06 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.97 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.83 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.21 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.74 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.77 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.28 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.53 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.99 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.92 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.00 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.80 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.00 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.42 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.96 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.81 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.86 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.65 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.64 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.16 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.22 | MC |