| SRR358795 | callus | wt | 5.20 | MC |
| SRR358796 | callus | wt | 5.92 | MC |
| SRR6320498 | carpel | wt | 3.63 | MC |
| SRR5560727 | caryopsis | wild_type | 0.31 | MC |
| SRR5560728 | caryopsis | wild_type | 0.98 | MC |
| SRR5560729 | caryopsis | wild_type | 1.49 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.08 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.59 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.32 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.76 | MC |
| SRR7265402 | coleoptile | 2dA | 0.48 | MC |
| SRR7265403 | coleoptile | 2dN | 0.46 | MC |
| SRR7265404 | coleoptile | 2dN | 0.50 | MC |
| SRR7265405 | coleoptile | 2dN | 0.29 | MC |
| SRR7265406 | coleoptile | 3dA | 0.31 | MC |
| SRR7265407 | coleoptile | 3dA | 0.47 | MC |
| SRR7265409 | coleoptile | 3dN | 0.49 | MC |
| SRR7265410 | coleoptile | 3dN | 1.19 | MC |
| SRR7265411 | coleoptile | 3dN | 0.98 | MC |
| SRR7265415 | coleoptile | 4dN | 0.72 | MC |
| SRR7265416 | coleoptile | 4dN | 0.90 | MC |
| SRR7265417 | coleoptile | 4dN | 1.52 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.45 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.45 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.06 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.04 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.02 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.83 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.77 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.69 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.79 | MC |
| SRR7265390 | embryo | 12hA | 0.38 | MC |
| SRR7265392 | embryo | 12hN | 0.43 | MC |
| SRR7265393 | embryo | 12hN | 0.41 | MC |
| SRR2338866 | endosprem | control | 2.37 | MC |
| SRR2338867 | endosprem | control | 2.19 | MC |
| SRR2338868 | endosprem | high_temperature | 1.63 | MC |
| SRR2338869 | endosprem | high_temperature | 1.32 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.69 | MC |
| SRR1213691 | flower | wt | 0.78 | MC |
| SRR8060836 | leaf | wild_type | 1.88 | MC |
| SRR8060837 | leaf | wild_type | 0.69 | MC |
| SRR8240824 | leaf | wild_type | 1.83 | MC |
| SRR8240825 | leaf | wild_type | 0.32 | MC |
| SRR8240818 | leaf | wild_type | 0.27 | MC |
| SRR8240820 | leaf | wild_type | 0.35 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.90 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.18 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.42 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.19 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.50 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.79 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.79 | MC |
| SRR1761531 | leaf | control | 0.79 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.96 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.81 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.37 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.69 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.08 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.41 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.50 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.86 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.69 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.30 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.94 | MC |
| SRR6502090 | leaf | control | 0.86 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.78 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.70 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.96 | MC |
| SRR6502100 | leaf | control | 0.44 | MC |
| SRR6502102 | leaf | control | 0.54 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.52 | MC |
| SRR6168980 | leaf | none (control) | 0.42 | MC |
| SRR6168981 | leaf | none (control) | 0.71 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.30 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.47 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.54 | MC |
| SRR8582889 | panicle | AM | 0.23 | MC |
| SRR8582890 | panicle | AM | 0.54 | MC |
| SRR8582893 | panicle | PM | 0.40 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.96 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.60 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.17 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.70 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.23 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.53 | MC |
| SRR5126147 | root | "mock,1_day" | 0.40 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.44 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.35 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.41 | MC |
| SRR5126155 | root | "mock,7_days" | 0.37 | MC |
| SRR5126157 | root | "mock,7_days" | 0.95 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.17 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.36 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.23 | MC |
| SRR5126167 | root | "mock,14_days" | 0.37 | MC |
| SRR5126169 | root | "mock,14_days" | 0.57 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.60 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.59 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.43 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.35 | MC |
| SRR4947481 | root | control | 0.94 | MC |
| SRR4947485 | root | Al | 1.54 | MC |
| SRR4947489 | root | control | 1.05 | MC |
| SRR4947492 | root | Al | 1.68 | MC |
| SRR4947493 | root | Al | 1.60 | MC |
| SRR4947497 | root | control | 1.09 | MC |
| SRR4947500 | root | Al | 1.41 | MC |
| SRR4947501 | root | Al | 1.70 | MC |
| SRR4947505 | root | control | 0.56 | MC |
| SRR4947508 | root | Al | 0.70 | MC |
| SRR4947509 | root | Al | 1.39 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.37 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.57 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.72 | MC |
| SRR6502094 | root | control | 0.63 | MC |
| SRR6502095 | root | control | 1.17 | MC |
| SRR6502096 | root | control | 0.35 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.17 | MC |
| SRR6502106 | root | control | 1.10 | MC |
| SRR6502107 | root | control | 0.41 | MC |
| SRR6502108 | root | control | 0.75 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.25 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.32 | MC |
| SRR6441554 | seedling | wild_type | 1.37 | MC |
| SRR6441555 | seedling | wild_type | 0.47 | MC |
| SRR2154086 | seedling | wt | 0.99 | MC |
| SRR2154083 | seedling | wt | 0.61 | MC |
| SRR2154084 | seedling | wt | 0.88 | MC |
| SRR2154085 | seedling | wt | 0.39 | MC |
| SRR3098741 | seedling | wt | 0.83 | MC |
| SRR3098742 | seedling | wt | 2.25 | MC |
| SRR3098743 | seedling | wt | 1.78 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.35 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.78 | MC |
| SRR1944583 | seedling | no_treatment | 0.98 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.66 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.19 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.36 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.02 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.09 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.65 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.95 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.10 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.01 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.49 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.21 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.46 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.80 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.26 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.33 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.35 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.82 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.50 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.41 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.55 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.54 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.69 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.08 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.45 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.43 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.96 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.40 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.36 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.55 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.97 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.49 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.37 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.52 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.78 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.84 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.38 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.76 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.10 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.48 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.53 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.30 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.71 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.30 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.88 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.85 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.33 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.59 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.80 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.55 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 8.14 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.73 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.48 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.98 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.86 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.95 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.13 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.89 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.41 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.37 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.30 | MC |