| SRR4457251 | 2nd_leaf | DAH4 | 0.26 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.60 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.78 | MC |
| SRR5560728 | caryopsis | wild_type | 0.82 | MC |
| SRR5560729 | caryopsis | wild_type | 0.37 | MC |
| SRR7265400 | coleoptile | 2dA | 1.92 | MC |
| SRR7265401 | coleoptile | 2dA | 2.04 | MC |
| SRR7265402 | coleoptile | 2dA | 2.38 | MC |
| SRR7265403 | coleoptile | 2dN | 3.19 | MC |
| SRR7265404 | coleoptile | 2dN | 2.63 | MC |
| SRR7265405 | coleoptile | 2dN | 1.43 | MC |
| SRR7265406 | coleoptile | 3dA | 0.92 | MC |
| SRR7265408 | coleoptile | 3dA | 1.23 | MC |
| SRR7265409 | coleoptile | 3dN | 2.12 | MC |
| SRR7265410 | coleoptile | 3dN | 1.67 | MC |
| SRR7265411 | coleoptile | 3dN | 1.47 | MC |
| SRR7265412 | coleoptile | 4dA | 1.60 | MC |
| SRR7265413 | coleoptile | 4dA | 1.03 | MC |
| SRR7265414 | coleoptile | 4dA | 1.19 | MC |
| SRR7265415 | coleoptile | 4dN | 1.56 | MC |
| SRR7265416 | coleoptile | 4dN | 1.45 | MC |
| SRR7265417 | coleoptile | 4dN | 1.92 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.23 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.91 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.49 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.46 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.82 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.74 | MC |
| SRR7265376 | embryo | 1hA | 1.89 | MC |
| SRR7265377 | embryo | 1hA | 1.67 | MC |
| SRR7265378 | embryo | 1hA | 2.07 | MC |
| SRR7265379 | embryo | 1hN | 1.67 | MC |
| SRR7265380 | embryo | 1hN | 2.45 | MC |
| SRR7265382 | embryo | 3hA | 4.24 | MC |
| SRR7265384 | embryo | 3hA | 2.18 | MC |
| SRR7265385 | embryo | 3hN | 1.93 | MC |
| SRR7265386 | embryo | 3hN | 1.73 | MC |
| SRR7265387 | embryo | 3hN | 1.91 | MC |
| SRR7265388 | embryo | 12hA | 3.36 | MC |
| SRR7265389 | embryo | 12hA | 3.10 | MC |
| SRR7265390 | embryo | 12hA | 2.09 | MC |
| SRR7265391 | embryo | 12hN | 3.86 | MC |
| SRR7265392 | embryo | 12hN | 0.99 | MC |
| SRR7265393 | embryo | 12hN | 3.06 | MC |
| SRR7265394 | embryo | 24hA | 3.34 | MC |
| SRR7265395 | embryo | 24hA | 3.26 | MC |
| SRR7265396 | embryo | 24hA | 2.66 | MC |
| SRR7265397 | embryo | 24hN | 2.13 | MC |
| SRR7265398 | embryo | 24hN | 3.79 | MC |
| SRR7265399 | embryo | 24hN | 3.23 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.31 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.50 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.22 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.43 | MC |
| SRR1213691 | flower | wt | 0.58 | MC |
| SRR8060835 | leaf | wild_type | 0.82 | MC |
| SRR8060836 | leaf | wild_type | 0.54 | MC |
| SRR8060837 | leaf | wild_type | 0.86 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.63 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.61 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.36 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.37 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.22 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.04 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.71 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.28 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.08 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.86 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.79 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.67 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.49 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.57 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.31 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.75 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.92 | MC |
| SRR504365 | leaf | wt | 0.78 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.51 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.34 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.43 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.35 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR1213692 | leaf | wt | 0.73 | MC |
| SRR1213693 | leaf | wt | 0.48 | MC |
| SRR6502088 | leaf | control | 1.13 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.97 | MC |
| SRR5856927 | leaf | control | 0.20 | MC |
| SRR6168979 | leaf | none (control) | 1.52 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.22 | MC |
| SRR8582890 | panicle | AM | 0.33 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.36 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.95 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.63 | MC |
| SRR5110445 | panicle | Dusk | 1.22 | MC |
| SRR5110446 | panicle | Dusk | 0.38 | MC |
| SRR5110447 | panicle | Dusk | 0.63 | MC |
| SRR5110448 | panicle | Dusk | 0.54 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.61 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.33 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.50 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.94 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.38 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.16 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.83 | MC |
| SRR1633182 | panicle | WT | 0.54 | MC |
| SRR1633185 | panicle | WT | 0.64 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.40 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.49 | MC |
| SRR5126147 | root | "mock,1_day" | 0.31 | MC |
| SRR5126148 | root | "mock,1_day" | 0.33 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.58 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.60 | MC |
| SRR5126153 | root | "mock,7_days" | 0.28 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.41 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.34 | MC |
| SRR5126169 | root | "mock,14_days" | 0.51 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.48 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.43 | MC |
| SRR1213695 | root | wt | 0.42 | MC |
| SRR4947498 | root | Al | 0.87 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.23 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.40 | MC |
| SRR2154083 | seedling | wt | 0.67 | MC |
| SRR2154084 | seedling | wt | 0.29 | MC |
| SRR2154085 | seedling | wt | 0.47 | MC |
| SRR3098741 | seedling | wt | 0.18 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.36 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.48 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.38 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.56 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.52 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.46 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.53 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.58 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.43 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.68 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.83 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.84 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.51 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.42 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.84 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.88 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.63 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.11 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.80 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.96 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.62 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.65 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.82 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.35 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.50 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.86 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.81 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.96 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.01 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.14 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.02 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.02 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.05 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.86 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.80 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.81 | MC |