| SRR4457251 | 2nd_leaf | DAH4 | 0.45 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.62 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.04 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.93 | MC |
| SRR5560729 | caryopsis | wild_type | 1.27 | MC |
| SRR7265403 | coleoptile | 2dN | 1.30 | MC |
| SRR7265404 | coleoptile | 2dN | 0.30 | MC |
| SRR7265405 | coleoptile | 2dN | 0.40 | MC |
| SRR7265408 | coleoptile | 3dA | 0.84 | MC |
| SRR7265409 | coleoptile | 3dN | 1.51 | MC |
| SRR7265410 | coleoptile | 3dN | 0.42 | MC |
| SRR7265412 | coleoptile | 4dA | 0.73 | MC |
| SRR7265414 | coleoptile | 4dA | 0.93 | MC |
| SRR7265417 | coleoptile | 4dN | 0.65 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.97 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.98 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.50 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.43 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.77 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.80 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.85 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.31 | MC |
| SRR7265385 | embryo | 3hN | 2.30 | MC |
| SRR7265392 | embryo | 12hN | 2.21 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.98 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.45 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.35 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.39 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.51 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.42 | MC |
| SRR8060835 | leaf | wild_type | 0.41 | MC |
| SRR8060836 | leaf | wild_type | 2.46 | MC |
| SRR8060837 | leaf | wild_type | 0.91 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.72 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.44 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.41 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.04 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.95 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.30 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 3.08 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.09 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.29 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.66 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.33 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.03 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.58 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.75 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.71 | MC |
| SRR1213693 | leaf | wt | 0.79 | MC |
| SRR5856932 | leaf | salt | 0.21 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.87 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 7.87 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 7.59 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 5.27 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 5.09 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 6.13 | MC |
| SRR6168974 | leaf | none (control) | 0.33 | MC |
| SRR6168980 | leaf | none (control) | 0.21 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.72 | MC |
| SRR5110432 | panicle | Dawn | 3.07 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.06 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.70 | MC |
| SRR5110447 | panicle | Dusk | 0.67 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.05 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.54 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.76 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.39 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.86 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.61 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.62 | MC |
| SRR5126169 | root | "mock,14_days" | 0.34 | MC |
| SRR4947487 | root | control | 0.48 | MC |
| SRR4947491 | root | Al | 0.93 | MC |
| SRR4947494 | root | control | 1.33 | MC |
| SRR4947498 | root | Al | 2.02 | MC |
| SRR4947499 | root | Al | 1.18 | MC |
| SRR4947500 | root | Al | 3.85 | MC |
| SRR4947506 | root | Al | 0.63 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.46 | MC |
| SRR6502094 | root | control | 4.29 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.57 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.82 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.97 | MC |
| SRR6441555 | seedling | wild_type | 1.00 | MC |
| SRR3098741 | seedling | wt | 1.63 | MC |
| SRR3098742 | seedling | wt | 0.52 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.99 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.15 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.42 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.12 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.46 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.36 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.30 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.28 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.25 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.69 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.80 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.44 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.48 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.75 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 7.21 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.90 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.30 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.22 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.36 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.97 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 6.51 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.50 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 7.09 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 6.23 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.74 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.38 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.19 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.82 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.99 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.17 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.77 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.94 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.86 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.56 | MC |