| SRR4457257 | 2nd_leaf | DAH20 | 0.92 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.61 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.83 | MC |
| SRR3745125 | anther | wt | 3.99 | MC |
| SRR3745126 | anther | wt | 1.68 | MC |
| SRR3745127 | anther | wt | 0.74 | MC |
| SRR358797 | callus | wt | 2.32 | MC |
| SRR358798 | callus | wt | 1.69 | MC |
| SRR6320473 | carpel | wt | 6.61 | MC |
| SRR5560727 | caryopsis | wild_type | 0.47 | MC |
| SRR5560728 | caryopsis | wild_type | 3.23 | MC |
| SRR5560729 | caryopsis | wild_type | 3.84 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.39 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.04 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.26 | MC |
| SRR4947495 | root | control | 1.26 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.58 | MC |
| SRR7265403 | coleoptile | 2dN | 3.29 | MC |
| SRR7265404 | coleoptile | 2dN | 2.16 | MC |
| SRR7265405 | coleoptile | 2dN | 2.35 | MC |
| SRR7265410 | coleoptile | 3dN | 3.47 | MC |
| SRR7265417 | coleoptile | 4dN | 2.77 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.16 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.56 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.11 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.48 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.42 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.42 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.23 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.96 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.41 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.07 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.54 | MC |
| SRR7265382 | embryo | 3hA | 3.86 | MC |
| SRR7265388 | embryo | 12hA | 3.00 | MC |
| SRR7265389 | embryo | 12hA | 3.64 | MC |
| SRR7265390 | embryo | 12hA | 3.09 | MC |
| SRR7265391 | embryo | 12hN | 1.89 | MC |
| SRR7265392 | embryo | 12hN | 0.70 | MC |
| SRR7265393 | embryo | 12hN | 1.02 | MC |
| SRR7265394 | embryo | 24hA | 2.58 | MC |
| SRR7265395 | embryo | 24hA | 2.35 | MC |
| SRR7265396 | embryo | 24hA | 2.02 | MC |
| SRR7265397 | embryo | 24hN | 1.60 | MC |
| SRR7265399 | embryo | 24hN | 0.67 | MC |
| SRR976168 | flag_leaf | wild_type | 0.35 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.63 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.38 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.91 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.54 | MC |
| SRR8240826 | leaf | wild_type | 0.86 | MC |
| SRR8240819 | leaf | wild_type | 0.41 | MC |
| SRR8240820 | leaf | wild_type | 0.68 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.54 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.99 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.22 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.38 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.04 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.14 | MC |
| SRR504365 | leaf | wt | 0.56 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.53 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.62 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.54 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.59 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.88 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.27 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.74 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.25 | MC |
| SRR6502088 | leaf | control | 2.73 | MC |
| SRR6502089 | leaf | control | 3.02 | MC |
| SRR6502090 | leaf | control | 2.12 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.96 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.35 | MC |
| SRR6502101 | leaf | control | 3.15 | MC |
| SRR6502102 | leaf | control | 2.15 | MC |
| SRR5856930 | leaf | salt | 0.29 | MC |
| SRR5856931 | leaf | salt | 0.36 | MC |
| SRR5856932 | leaf | salt | 0.54 | MC |
| SRR5856933 | leaf | control | 0.35 | MC |
| SRR5856934 | leaf | control | 0.44 | MC |
| SRR5856936 | leaf | salt | 0.58 | MC |
| SRR5856937 | leaf | salt | 0.29 | MC |
| SRR5856938 | leaf | salt | 0.41 | MC |
| SRR6168973 | leaf | none (control) | 2.35 | MC |
| SRR6168974 | leaf | none (control) | 1.83 | MC |
| SRR6168975 | leaf | none (control) | 1.06 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.00 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.96 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.00 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.47 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.30 | MC |
| SRR8582888 | panicle | AM | 0.65 | MC |
| SRR8582890 | panicle | AM | 0.71 | MC |
| SRR5110431 | panicle | Dawn | 0.37 | MC |
| SRR4947496 | root | control | 1.10 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.66 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.30 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.37 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.61 | MC |
| SRR5110438 | panicle | Dawn + 7h | 4.02 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.93 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.74 | MC |
| SRR5110447 | panicle | Dusk | 3.47 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.35 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.90 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.75 | MC |
| SRR1633182 | panicle | WT | 1.09 | MC |
| SRR1633185 | panicle | WT | 2.51 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.53 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.27 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.86 | MC |
| SRR5126147 | root | "mock,1_day" | 3.59 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.68 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.88 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.29 | MC |
| SRR4947479 | root | control | 1.50 | MC |
| SRR4947480 | root | control | 1.15 | MC |
| SRR4947481 | root | control | 4.13 | MC |
| SRR4947482 | root | Al | 1.98 | MC |
| SRR4947483 | root | Al | 1.85 | MC |
| SRR4947484 | root | Al | 2.16 | MC |
| SRR4947485 | root | Al | 2.75 | MC |
| SRR4947487 | root | control | 1.04 | MC |
| SRR4947488 | root | control | 0.86 | MC |
| SRR4947489 | root | control | 1.80 | MC |
| SRR4947490 | root | Al | 2.53 | MC |
| SRR4947491 | root | Al | 1.07 | MC |
| SRR4947492 | root | Al | 2.28 | MC |
| SRR4947494 | root | control | 3.17 | MC |
| SRR4947497 | root | control | 1.17 | MC |
| SRR4947498 | root | Al | 3.28 | MC |
| SRR4947499 | root | Al | 3.31 | MC |
| SRR4947500 | root | Al | 4.73 | MC |
| SRR4947501 | root | Al | 2.00 | MC |
| SRR4947502 | root | control | 4.27 | MC |
| SRR4947503 | root | control | 1.30 | MC |
| SRR4947504 | root | control | 2.18 | MC |
| SRR4947505 | root | control | 1.71 | MC |
| SRR4947506 | root | Al | 1.75 | MC |
| SRR4947507 | root | Al | 1.86 | MC |
| SRR4947508 | root | Al | 4.48 | MC |
| SRR4947509 | root | Al | 2.79 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.30 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.76 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.53 | MC |
| SRR6502094 | root | control | 2.40 | MC |
| SRR6502095 | root | control | 2.92 | MC |
| SRR6502096 | root | control | 3.15 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.42 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.52 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.51 | MC |
| SRR6502106 | root | control | 2.74 | MC |
| SRR6502107 | root | control | 3.57 | MC |
| SRR6502108 | root | control | 3.52 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.40 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.82 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.64 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.42 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.94 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.52 | MC |
| SRR2154086 | seedling | wt | 2.72 | MC |
| SRR2154082 | seedling | wt | 3.47 | MC |
| SRR2154083 | seedling | wt | 2.28 | MC |
| SRR2154084 | seedling | wt | 1.64 | MC |
| SRR2154085 | seedling | wt | 2.96 | MC |
| SRR2154087 | seedling | wt | 3.07 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.41 | MC |
| SRR358793 | seedling | wt | 0.95 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.94 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.37 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.92 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.67 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.79 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.92 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.93 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.80 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.58 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.26 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.39 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.19 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.64 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.44 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.73 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.35 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.66 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.46 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.20 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.02 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.08 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.72 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.00 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.02 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.87 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.79 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.58 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.48 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.47 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.75 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.19 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.82 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.31 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.58 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.81 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.14 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.61 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.00 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.42 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.11 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.89 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.94 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.75 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.54 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.08 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.80 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.82 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.04 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.32 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.91 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.59 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.49 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.50 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 3.27 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.32 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.59 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.62 | MC |