| SRR4457252 | 2nd_leaf | DAH12 | 0.29 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.44 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.23 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.28 | MC |
| SRR3745126 | anther | wt | 0.68 | MC |
| SRR3745127 | anther | wt | 1.19 | MC |
| SRR6320498 | carpel | wt | 1.38 | MC |
| SRR5560727 | caryopsis | wild_type | 0.46 | MC |
| SRR5560728 | caryopsis | wild_type | 0.88 | MC |
| SRR5560729 | caryopsis | wild_type | 1.31 | MC |
| SRR4947495 | root | control | 1.06 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR7265376 | embryo | 1hA | 0.91 | MC |
| SRR7265377 | embryo | 1hA | 0.38 | MC |
| SRR7265378 | embryo | 1hA | 0.42 | MC |
| SRR7265381 | embryo | 1hN | 0.27 | MC |
| SRR7265382 | embryo | 3hA | 1.98 | MC |
| SRR7265383 | embryo | 3hA | 1.10 | MC |
| SRR7265384 | embryo | 3hA | 1.38 | MC |
| SRR7265386 | embryo | 3hN | 0.56 | MC |
| SRR7265387 | embryo | 3hN | 0.59 | MC |
| SRR2338867 | endosprem | control | 1.35 | MC |
| SRR2338868 | endosprem | high_temperature | 2.44 | MC |
| SRR2338869 | endosprem | high_temperature | 2.49 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.38 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.20 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.25 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.58 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.57 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.32 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.39 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.36 | MC |
| SRR1213691 | flower | wt | 0.41 | MC |
| SRR8060836 | leaf | wild_type | 0.47 | MC |
| SRR8240824 | leaf | wild_type | 0.25 | MC |
| SRR8240826 | leaf | wild_type | 0.42 | MC |
| SRR8240818 | leaf | wild_type | 0.39 | MC |
| SRR8240819 | leaf | wild_type | 0.29 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.72 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.45 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.18 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.21 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.33 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.71 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.72 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.11 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.54 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.66 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.47 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.66 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.47 | MC |
| SRR1761529 | leaf | drought | 0.66 | MC |
| SRR1761531 | leaf | control | 0.47 | MC |
| SRR6417969 | leaf | H2O_control | 0.77 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.21 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.33 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.48 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.24 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.35 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.72 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.89 | MC |
| SRR6502100 | leaf | control | 0.36 | MC |
| SRR5856927 | leaf | control | 0.31 | MC |
| SRR5856928 | leaf | control | 0.40 | MC |
| SRR5856929 | leaf | control | 0.22 | MC |
| SRR5856931 | leaf | salt | 0.31 | MC |
| SRR5856932 | leaf | salt | 0.47 | MC |
| SRR5856933 | leaf | control | 0.43 | MC |
| SRR5856934 | leaf | control | 0.29 | MC |
| SRR5856935 | leaf | control | 0.28 | MC |
| SRR5856936 | leaf | salt | 0.25 | MC |
| SRR5856937 | leaf | salt | 0.39 | MC |
| SRR5856938 | leaf | salt | 0.28 | MC |
| SRR6168975 | leaf | none (control) | 0.53 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.55 | MC |
| SRR6168979 | leaf | none (control) | 0.65 | MC |
| SRR6168980 | leaf | none (control) | 0.61 | MC |
| SRR6168981 | leaf | none (control) | 0.75 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.96 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.47 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.70 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.78 | MC |
| SRR5110445 | panicle | Dusk | 0.62 | MC |
| SRR5110446 | panicle | Dusk | 0.56 | MC |
| SRR5110447 | panicle | Dusk | 0.42 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.37 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.30 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.73 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.55 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.47 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.15 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.97 | MC |
| SRR5126147 | root | "mock,1_day" | 0.38 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.33 | MC |
| SRR5126155 | root | "mock,7_days" | 0.37 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.53 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.34 | MC |
| SRR1213695 | root | wt | 0.32 | MC |
| SRR4947491 | root | Al | 0.51 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.42 | MC |
| SRR6502096 | root | control | 0.36 | MC |
| SRR6502106 | root | control | 0.39 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.24 | MC |
| SRR2154083 | seedling | wt | 0.28 | MC |
| SRR3098741 | seedling | wt | 0.28 | MC |
| SRR3098743 | seedling | wt | 0.18 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.35 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.37 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.68 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.64 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.58 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.94 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.21 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.19 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.48 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.30 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.62 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.32 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.25 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.61 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.84 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.46 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.40 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.89 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.51 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.62 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.61 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.46 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.19 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.35 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.39 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.36 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.35 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.49 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.38 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.22 | MC |