| SRR4457251 | 2nd_leaf | DAH4 | 0.23 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.26 | MC |
| SRR3745125 | anther | wt | 0.70 | MC |
| SRR3745126 | anther | wt | 0.46 | MC |
| SRR358796 | callus | wt | 3.16 | MC |
| SRR358798 | callus | wt | 1.07 | MC |
| SRR5560728 | caryopsis | wild_type | 0.62 | MC |
| SRR5560729 | caryopsis | wild_type | 0.86 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.70 | MC |
| SRR7265400 | coleoptile | 2dA | 1.23 | MC |
| SRR7265401 | coleoptile | 2dA | 1.25 | MC |
| SRR7265402 | coleoptile | 2dA | 0.76 | MC |
| SRR7265403 | coleoptile | 2dN | 0.76 | MC |
| SRR7265404 | coleoptile | 2dN | 0.86 | MC |
| SRR7265405 | coleoptile | 2dN | 1.46 | MC |
| SRR7265411 | coleoptile | 3dN | 0.84 | MC |
| SRR7265413 | coleoptile | 4dA | 0.56 | MC |
| SRR7265417 | coleoptile | 4dN | 0.48 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.69 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.95 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.33 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.94 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.58 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.41 | MC |
| SRR7265376 | embryo | 1hA | 1.79 | MC |
| SRR7265377 | embryo | 1hA | 1.69 | MC |
| SRR7265378 | embryo | 1hA | 1.90 | MC |
| SRR7265379 | embryo | 1hN | 1.95 | MC |
| SRR7265380 | embryo | 1hN | 1.41 | MC |
| SRR7265381 | embryo | 1hN | 2.48 | MC |
| SRR7265382 | embryo | 3hA | 1.22 | MC |
| SRR7265383 | embryo | 3hA | 1.76 | MC |
| SRR7265384 | embryo | 3hA | 1.57 | MC |
| SRR7265385 | embryo | 3hN | 0.91 | MC |
| SRR7265386 | embryo | 3hN | 2.74 | MC |
| SRR7265387 | embryo | 3hN | 2.30 | MC |
| SRR7265388 | embryo | 12hA | 1.43 | MC |
| SRR7265389 | embryo | 12hA | 2.17 | MC |
| SRR7265390 | embryo | 12hA | 2.04 | MC |
| SRR7265391 | embryo | 12hN | 2.54 | MC |
| SRR7265392 | embryo | 12hN | 1.73 | MC |
| SRR7265393 | embryo | 12hN | 2.63 | MC |
| SRR7265394 | embryo | 24hA | 1.41 | MC |
| SRR7265395 | embryo | 24hA | 1.42 | MC |
| SRR7265396 | embryo | 24hA | 1.67 | MC |
| SRR7265397 | embryo | 24hN | 1.56 | MC |
| SRR7265398 | embryo | 24hN | 1.89 | MC |
| SRR7265399 | embryo | 24hN | 2.35 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.46 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.83 | MC |
| SRR1213691 | flower | wt | 1.77 | MC |
| SRR8240825 | leaf | wild_type | 0.30 | MC |
| SRR8240826 | leaf | wild_type | 1.13 | MC |
| SRR8240818 | leaf | wild_type | 0.34 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.61 | MC |
| SRR504365 | leaf | wt | 0.48 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.56 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.34 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.92 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.21 | MC |
| SRR1213692 | leaf | wt | 0.48 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.73 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.55 | MC |
| SRR6502089 | leaf | control | 0.70 | MC |
| SRR6502090 | leaf | control | 1.01 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.20 | MC |
| SRR6168973 | leaf | none (control) | 1.02 | MC |
| SRR8582888 | panicle | AM | 0.35 | MC |
| SRR8582889 | panicle | AM | 0.70 | MC |
| SRR8582891 | panicle | PM | 1.35 | MC |
| SRR8582892 | panicle | PM | 1.31 | MC |
| SRR8582893 | panicle | PM | 1.86 | MC |
| SRR5110432 | panicle | Dawn | 0.40 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.75 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.40 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.62 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.34 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.88 | MC |
| SRR1633182 | panicle | WT | 0.56 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.32 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.97 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.78 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.46 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.56 | MC |
| SRR5126147 | root | "mock,1_day" | 2.12 | MC |
| SRR5126148 | root | "mock,1_day" | 2.91 | MC |
| SRR5126149 | root | "mock,1_day" | 0.60 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.26 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.52 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.08 | MC |
| SRR5126153 | root | "mock,7_days" | 1.31 | MC |
| SRR5126155 | root | "mock,7_days" | 1.06 | MC |
| SRR5126157 | root | "mock,7_days" | 1.29 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.00 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.13 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.27 | MC |
| SRR5126165 | root | "mock,14_days" | 0.61 | MC |
| SRR5126167 | root | "mock,14_days" | 0.74 | MC |
| SRR5126169 | root | "mock,14_days" | 2.18 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.58 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.39 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.48 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.92 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.02 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.39 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.29 | MC |
| SRR6502094 | root | control | 1.75 | MC |
| SRR6502095 | root | control | 1.41 | MC |
| SRR6502096 | root | control | 1.50 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.03 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.97 | MC |
| SRR6502106 | root | control | 0.47 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.13 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.42 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.14 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.10 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.82 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.40 | MC |
| SRR6441554 | seedling | wild_type | 0.40 | MC |
| SRR2154087 | seedling | wt | 0.46 | MC |
| SRR3098741 | seedling | wt | 0.27 | MC |
| SRR3098742 | seedling | wt | 0.61 | MC |
| SRR3098743 | seedling | wt | 0.44 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.42 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.42 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.38 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.56 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.97 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.13 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.22 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.86 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.76 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.39 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.41 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.51 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.01 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.37 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.24 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.58 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.34 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.34 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.92 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.32 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.90 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.65 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.06 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.55 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.86 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.52 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.02 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.70 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.19 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.55 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.33 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.58 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.20 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.40 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.17 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.15 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.63 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.16 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.58 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.66 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.81 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.68 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.11 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.87 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.87 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.51 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.23 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.59 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.01 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.51 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.81 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.53 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.24 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.51 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.74 | MC |