| SRR4457249 | 2nd_leaf | DAH4 | 1.90 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.74 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.21 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.53 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.50 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.56 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.36 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.28 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.66 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.95 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.13 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.27 | MC |
| SRR358796 | callus | wt | 2.06 | MC |
| SRR358797 | callus | wt | 2.79 | MC |
| SRR5560727 | caryopsis | wild_type | 2.41 | MC |
| SRR5560728 | caryopsis | wild_type | 2.20 | MC |
| SRR5560729 | caryopsis | wild_type | 3.06 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.22 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.26 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.45 | MC |
| SRR2338867 | endosprem | control | 0.92 | MC |
| SRR2338869 | endosprem | high_temperature | 1.21 | MC |
| SRR976168 | flag_leaf | wild_type | 0.49 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.35 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.70 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.61 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.69 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.97 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.67 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.07 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.62 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.52 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.65 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.00 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.11 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.49 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.52 | MC |
| SRR1213691 | flower | wt | 1.67 | MC |
| SRR8240824 | leaf | wild_type | 0.39 | MC |
| SRR8240825 | leaf | wild_type | 0.61 | MC |
| SRR8240826 | leaf | wild_type | 0.38 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.80 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.15 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.93 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.60 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.15 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.24 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.60 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.43 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.72 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.85 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.00 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.46 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.41 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.22 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.84 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.23 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.87 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.54 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.08 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.90 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.25 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.86 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.74 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.77 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.34 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.56 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.57 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.43 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.04 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.53 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.29 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.04 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.10 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.74 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.74 | MC |
| SRR1761528 | leaf | drought | 1.74 | MC |
| SRR504365 | leaf | wt | 3.91 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.43 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.97 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.28 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.87 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.19 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.63 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.28 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.59 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.00 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.00 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.48 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.65 | MC |
| SRR1213692 | leaf | wt | 3.56 | MC |
| SRR1213693 | leaf | wt | 2.08 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.79 | MC |
| SRR6502088 | leaf | control | 0.98 | MC |
| SRR6502089 | leaf | control | 0.95 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.32 | MC |
| SRR6502100 | leaf | control | 0.98 | MC |
| SRR5856931 | leaf | salt | 0.16 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.54 | MC |
| SRR8582888 | panicle | AM | 0.99 | MC |
| SRR8582889 | panicle | AM | 0.61 | MC |
| SRR8582890 | panicle | AM | 0.71 | MC |
| SRR8582891 | panicle | PM | 1.60 | MC |
| SRR8582892 | panicle | PM | 3.65 | MC |
| SRR8582893 | panicle | PM | 1.10 | MC |
| SRR5110430 | panicle | Dawn | 0.72 | MC |
| SRR5110432 | panicle | Dawn | 0.57 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.76 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.11 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.56 | MC |
| SRR5110445 | panicle | Dusk | 0.45 | MC |
| SRR5110447 | panicle | Dusk | 0.66 | MC |
| SRR5110448 | panicle | Dusk | 0.65 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.42 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.35 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.79 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.72 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.16 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.51 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.58 | MC |
| SRR1633182 | panicle | WT | 2.21 | MC |
| SRR1633185 | panicle | WT | 2.79 | MC |
| SRR5126147 | root | "mock,1_day" | 1.65 | MC |
| SRR5126149 | root | "mock,1_day" | 3.04 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.63 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.26 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.80 | MC |
| SRR5126153 | root | "mock,7_days" | 3.17 | MC |
| SRR5126155 | root | "mock,7_days" | 3.59 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.73 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.11 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.58 | MC |
| SRR5126167 | root | "mock,14_days" | 2.35 | MC |
| SRR5126169 | root | "mock,14_days" | 4.46 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.67 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.20 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.24 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.51 | MC |
| SRR1213694 | root | wt | 1.68 | MC |
| SRR1213695 | root | wt | 2.63 | MC |
| SRR4947482 | root | Al | 0.94 | MC |
| SRR4947491 | root | Al | 0.59 | MC |
| SRR4947498 | root | Al | 1.23 | MC |
| SRR4947499 | root | Al | 1.17 | MC |
| SRR4947506 | root | Al | 0.41 | MC |
| SRR4947507 | root | Al | 0.51 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.53 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.31 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.34 | MC |
| SRR6502094 | root | control | 1.18 | MC |
| SRR6502096 | root | control | 1.39 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.19 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.90 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.93 | MC |
| SRR6502106 | root | control | 1.41 | MC |
| SRR6502107 | root | control | 1.76 | MC |
| SRR6502108 | root | control | 1.98 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.40 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.48 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.01 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.46 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.90 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.91 | MC |
| SRR6441554 | seedling | wild_type | 1.39 | MC |
| SRR6441555 | seedling | wild_type | 0.83 | MC |
| SRR2154086 | seedling | wt | 1.80 | MC |
| SRR2154085 | seedling | wt | 1.32 | MC |
| SRR3098741 | seedling | wt | 0.50 | MC |
| SRR3098742 | seedling | wt | 0.54 | MC |
| SRR3098743 | seedling | wt | 0.66 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.57 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.74 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.99 | MC |
| SRR1944583 | seedling | no_treatment | 1.95 | MC |
| SRR358791 | seedling | wt | 2.61 | MC |
| SRR358792 | seedling | wt | 2.26 | MC |
| SRR358794 | seedling | wt | 0.93 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.59 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.94 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.32 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.00 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.53 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.29 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.18 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.98 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.75 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.82 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.87 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.91 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.28 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.61 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.58 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.90 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.48 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.39 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.71 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.64 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.66 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.85 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.79 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.03 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.73 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.37 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.10 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.43 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.36 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.40 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.72 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.95 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.02 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.71 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.28 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.89 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.33 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.13 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.98 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.78 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.32 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.72 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.58 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.41 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.49 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.17 | MC |