| SRR4457258 | 2nd_leaf | DAH28 | 0.24 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.35 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.59 | MC |
| SRR358796 | callus | wt | 1.57 | MC |
| SRR358797 | callus | wt | 0.98 | MC |
| SRR5560727 | caryopsis | wild_type | 1.69 | MC |
| SRR5560728 | caryopsis | wild_type | 1.35 | MC |
| SRR5560729 | caryopsis | wild_type | 1.11 | MC |
| SRR2338867 | endosprem | control | 0.45 | MC |
| SRR2338868 | endosprem | high_temperature | 0.74 | MC |
| SRR2338869 | endosprem | high_temperature | 0.62 | MC |
| SRR976168 | flag_leaf | wild_type | 0.52 | MC |
| SRR1213691 | flower | wt | 0.31 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.36 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.56 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.87 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.51 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.71 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.86 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.50 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.16 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.81 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.77 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.41 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.64 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.21 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.72 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.48 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.59 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.43 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.35 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.82 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.32 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.82 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.32 | MC |
| SRR1761528 | leaf | drought | 0.82 | MC |
| SRR1761529 | leaf | drought | 1.32 | MC |
| SRR504365 | leaf | wt | 0.86 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.37 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.46 | MC |
| SRR6417969 | leaf | H2O_control | 0.90 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.00 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.07 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.21 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.45 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.64 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.37 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.75 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.27 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.08 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.58 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.75 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.84 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.00 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.40 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.33 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.40 | MC |
| SRR1213693 | leaf | wt | 0.36 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.19 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.07 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.57 | MC |
| SRR6502088 | leaf | control | 0.70 | MC |
| SRR6502089 | leaf | control | 0.89 | MC |
| SRR6502090 | leaf | control | 1.35 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.39 | MC |
| SRR6502101 | leaf | control | 0.34 | MC |
| SRR6502102 | leaf | control | 0.38 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.46 | MC |
| SRR8582888 | panicle | AM | 0.41 | MC |
| SRR8582889 | panicle | AM | 0.39 | MC |
| SRR8582890 | panicle | AM | 0.44 | MC |
| SRR8582891 | panicle | PM | 0.61 | MC |
| SRR8582893 | panicle | PM | 0.57 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.46 | MC |
| SRR1633182 | panicle | WT | 0.31 | MC |
| SRR1633185 | panicle | WT | 1.16 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.28 | MC |
| SRR5126147 | root | "mock,1_day" | 0.46 | MC |
| SRR5126148 | root | "mock,1_day" | 0.48 | MC |
| SRR5126149 | root | "mock,1_day" | 1.42 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.95 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.42 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.91 | MC |
| SRR5126153 | root | "mock,7_days" | 0.60 | MC |
| SRR5126155 | root | "mock,7_days" | 1.21 | MC |
| SRR5126157 | root | "mock,7_days" | 0.50 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.83 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.29 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.41 | MC |
| SRR5126165 | root | "mock,14_days" | 1.53 | MC |
| SRR5126167 | root | "mock,14_days" | 0.88 | MC |
| SRR5126169 | root | "mock,14_days" | 1.10 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.72 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.36 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.95 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.78 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.12 | MC |
| SRR1213695 | root | wt | 0.18 | MC |
| SRR4947482 | root | Al | 0.33 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.62 | MC |
| SRR6441554 | seedling | wild_type | 0.32 | MC |
| SRR2154086 | seedling | wt | 0.41 | MC |
| SRR2154082 | seedling | wt | 0.58 | MC |
| SRR2154085 | seedling | wt | 0.92 | MC |
| SRR3098741 | seedling | wt | 0.23 | MC |
| SRR3098743 | seedling | wt | 0.17 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.35 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.51 | MC |
| SRR1944583 | seedling | no_treatment | 0.50 | MC |
| SRR358791 | seedling | wt | 0.76 | MC |
| SRR358793 | seedling | wt | 0.98 | MC |
| SRR358794 | seedling | wt | 0.53 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.18 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.90 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.16 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.84 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.00 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.65 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.46 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.67 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.98 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.77 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.22 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.53 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.40 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.86 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.11 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.17 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.35 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.49 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.72 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.65 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.71 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.80 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.19 | MC |