| SRR4457250 | 2nd_leaf | DAH4 | 3.14 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.28 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.44 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.25 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.69 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 4.14 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.97 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.17 | MC |
| SRR3745125 | anther | wt | 2.00 | MC |
| SRR3745126 | anther | wt | 2.30 | MC |
| SRR3745127 | anther | wt | 1.98 | MC |
| SRR358795 | callus | wt | 5.18 | MC |
| SRR358796 | callus | wt | 4.69 | MC |
| SRR358797 | callus | wt | 5.27 | MC |
| SRR358798 | callus | wt | 5.54 | MC |
| SRR6320498 | carpel | wt | 1.18 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.00 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.12 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.51 | MC |
| SRR7265400 | coleoptile | 2dA | 1.85 | MC |
| SRR7265401 | coleoptile | 2dA | 1.59 | MC |
| SRR7265402 | coleoptile | 2dA | 1.75 | MC |
| SRR7265403 | coleoptile | 2dN | 0.81 | MC |
| SRR7265404 | coleoptile | 2dN | 1.12 | MC |
| SRR7265405 | coleoptile | 2dN | 0.95 | MC |
| SRR7265406 | coleoptile | 3dA | 0.32 | MC |
| SRR7265407 | coleoptile | 3dA | 1.06 | MC |
| SRR7265408 | coleoptile | 3dA | 0.79 | MC |
| SRR7265409 | coleoptile | 3dN | 0.62 | MC |
| SRR7265410 | coleoptile | 3dN | 0.63 | MC |
| SRR7265411 | coleoptile | 3dN | 0.50 | MC |
| SRR7265412 | coleoptile | 4dA | 1.49 | MC |
| SRR7265413 | coleoptile | 4dA | 2.28 | MC |
| SRR7265414 | coleoptile | 4dA | 1.97 | MC |
| SRR7265415 | coleoptile | 4dN | 0.65 | MC |
| SRR7265416 | coleoptile | 4dN | 0.61 | MC |
| SRR7265417 | coleoptile | 4dN | 0.54 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.23 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.98 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.06 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.02 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.91 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 4.04 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.05 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.99 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.01 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.37 | MC |
| SRR7265376 | embryo | 1hA | 0.81 | MC |
| SRR7265377 | embryo | 1hA | 0.92 | MC |
| SRR7265378 | embryo | 1hA | 0.94 | MC |
| SRR7265379 | embryo | 1hN | 0.88 | MC |
| SRR7265380 | embryo | 1hN | 0.63 | MC |
| SRR7265381 | embryo | 1hN | 0.76 | MC |
| SRR7265382 | embryo | 3hA | 0.75 | MC |
| SRR7265383 | embryo | 3hA | 0.62 | MC |
| SRR7265384 | embryo | 3hA | 0.62 | MC |
| SRR7265385 | embryo | 3hN | 1.01 | MC |
| SRR7265386 | embryo | 3hN | 0.92 | MC |
| SRR7265387 | embryo | 3hN | 0.82 | MC |
| SRR7265388 | embryo | 12hA | 1.74 | MC |
| SRR7265389 | embryo | 12hA | 2.12 | MC |
| SRR7265390 | embryo | 12hA | 1.90 | MC |
| SRR7265391 | embryo | 12hN | 1.51 | MC |
| SRR7265392 | embryo | 12hN | 1.12 | MC |
| SRR7265393 | embryo | 12hN | 1.41 | MC |
| SRR7265394 | embryo | 24hA | 0.86 | MC |
| SRR7265395 | embryo | 24hA | 2.06 | MC |
| SRR7265396 | embryo | 24hA | 1.36 | MC |
| SRR7265397 | embryo | 24hN | 1.18 | MC |
| SRR7265398 | embryo | 24hN | 1.39 | MC |
| SRR7265399 | embryo | 24hN | 1.15 | MC |
| SRR2338866 | endosprem | control | 2.34 | MC |
| SRR2338868 | endosprem | high_temperature | 1.26 | MC |
| SRR976168 | flag_leaf | wild_type | 2.53 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.10 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.00 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.82 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.58 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.96 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.73 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.05 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.62 | MC |
| SRR1213691 | flower | wt | 1.87 | MC |
| SRR8240825 | leaf | wild_type | 2.47 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.63 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.72 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.57 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.18 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.63 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.16 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.09 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.95 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.42 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.84 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.99 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.75 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.75 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.76 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.47 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.31 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.46 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.73 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.32 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.80 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.51 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.57 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.29 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.87 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.30 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 6.36 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.38 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.74 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.81 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.67 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.38 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.74 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.81 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.67 | MC |
| SRR1761528 | leaf | drought | 2.38 | MC |
| SRR1761529 | leaf | drought | 2.74 | MC |
| SRR1761530 | leaf | control | 5.81 | MC |
| SRR1761531 | leaf | control | 5.67 | MC |
| SRR504365 | leaf | wt | 1.71 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.95 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.29 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.26 | MC |
| SRR6417967 | leaf | H2O_control | 2.92 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.74 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.35 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.09 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.96 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.24 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.02 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.68 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.66 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.04 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.90 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.38 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.30 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.11 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.15 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.42 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.44 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.99 | MC |
| SRR6502102 | leaf | control | 4.16 | MC |
| SRR5856928 | leaf | control | 0.21 | MC |
| SRR5856932 | leaf | salt | 0.18 | MC |
| SRR5856934 | leaf | control | 0.68 | MC |
| SRR5856935 | leaf | control | 0.24 | MC |
| SRR5856936 | leaf | salt | 0.13 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.56 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.03 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.92 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.68 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.47 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.75 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.65 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.83 | MC |
| SRR6168973 | leaf | none (control) | 3.64 | MC |
| SRR6168974 | leaf | none (control) | 2.13 | MC |
| SRR6168975 | leaf | none (control) | 3.23 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 5.76 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.21 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.90 | MC |
| SRR6168979 | leaf | none (control) | 0.65 | MC |
| SRR6168981 | leaf | none (control) | 0.46 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.67 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.55 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR8582888 | panicle | AM | 1.53 | MC |
| SRR8582891 | panicle | PM | 3.25 | MC |
| SRR8582892 | panicle | PM | 6.08 | MC |
| SRR8582893 | panicle | PM | 3.02 | MC |
| SRR5110430 | panicle | Dawn | 3.03 | MC |
| SRR5110431 | panicle | Dawn | 3.22 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.81 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.47 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.39 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.59 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.21 | MC |
| SRR5110448 | panicle | Dusk | 5.11 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.29 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.91 | MC |
| SRR5110452 | panicle | Dawn + 14h | 5.07 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.59 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.77 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.94 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.62 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.35 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.12 | MC |
| SRR5126147 | root | "mock,1_day" | 0.45 | MC |
| SRR5126148 | root | "mock,1_day" | 0.37 | MC |
| SRR5126149 | root | "mock,1_day" | 0.83 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.67 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.50 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.57 | MC |
| SRR5126153 | root | "mock,7_days" | 0.51 | MC |
| SRR5126155 | root | "mock,7_days" | 0.55 | MC |
| SRR5126157 | root | "mock,7_days" | 0.41 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.38 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.43 | MC |
| SRR5126167 | root | "mock,14_days" | 0.61 | MC |
| SRR5126169 | root | "mock,14_days" | 0.52 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.64 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.31 | MC |
| SRR1213694 | root | wt | 0.92 | MC |
| SRR4947479 | root | control | 0.67 | MC |
| SRR4947481 | root | control | 0.51 | MC |
| SRR4947482 | root | Al | 0.58 | MC |
| SRR4947483 | root | Al | 0.58 | MC |
| SRR4947484 | root | Al | 0.64 | MC |
| SRR4947485 | root | Al | 0.53 | MC |
| SRR4947487 | root | control | 0.65 | MC |
| SRR4947488 | root | control | 0.63 | MC |
| SRR4947490 | root | Al | 0.79 | MC |
| SRR4947491 | root | Al | 1.00 | MC |
| SRR4947494 | root | control | 0.61 | MC |
| SRR4947497 | root | control | 0.88 | MC |
| SRR4947498 | root | Al | 1.53 | MC |
| SRR4947499 | root | Al | 0.47 | MC |
| SRR4947500 | root | Al | 0.59 | MC |
| SRR4947501 | root | Al | 0.92 | MC |
| SRR4947502 | root | control | 0.83 | MC |
| SRR4947503 | root | control | 0.75 | MC |
| SRR4947504 | root | control | 0.68 | MC |
| SRR4947505 | root | control | 0.68 | MC |
| SRR4947506 | root | Al | 0.72 | MC |
| SRR4947507 | root | Al | 1.15 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.23 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.88 | MC |
| SRR6502094 | root | control | 0.52 | MC |
| SRR6502095 | root | control | 0.79 | MC |
| SRR6502096 | root | control | 0.50 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.07 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.89 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.56 | MC |
| SRR6502106 | root | control | 0.97 | MC |
| SRR6502107 | root | control | 0.88 | MC |
| SRR6502108 | root | control | 0.64 | MC |
| SRR2154086 | seedling | wt | 3.04 | MC |
| SRR2154084 | seedling | wt | 2.58 | MC |
| SRR2154085 | seedling | wt | 3.07 | MC |
| SRR3098742 | seedling | wt | 2.63 | MC |
| SRR3098743 | seedling | wt | 2.13 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.83 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.40 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.02 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.24 | MC |
| SRR1944583 | seedling | no_treatment | 3.80 | MC |
| SRR358791 | seedling | wt | 6.51 | MC |
| SRR358792 | seedling | wt | 7.36 | MC |
| SRR358793 | seedling | wt | 4.62 | MC |
| SRR358794 | seedling | wt | 5.02 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.63 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.91 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.08 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.75 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.40 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.63 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 4.11 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.24 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.16 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.04 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.33 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.66 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.26 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.27 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.18 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.90 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.91 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.72 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 7.94 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.01 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.02 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.77 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.53 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.64 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.58 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.79 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.62 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.72 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.05 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.12 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.78 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.28 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.74 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.75 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.01 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.13 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.37 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.01 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.82 | MC |