| SRR3745126 | anther | wt | 0.62 | MC |
| SRR358795 | callus | wt | 1.31 | MC |
| SRR358797 | callus | wt | 3.25 | MC |
| SRR358798 | callus | wt | 2.36 | MC |
| SRR5560727 | caryopsis | wild_type | 2.01 | MC |
| SRR5560728 | caryopsis | wild_type | 2.08 | MC |
| SRR5560729 | caryopsis | wild_type | 1.73 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.47 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.00 | MC |
| SRR4947495 | root | control | 2.41 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.71 | MC |
| SRR7265401 | coleoptile | 2dA | 0.32 | MC |
| SRR7265402 | coleoptile | 2dA | 0.36 | MC |
| SRR7265412 | coleoptile | 4dA | 1.38 | MC |
| SRR7265413 | coleoptile | 4dA | 0.48 | MC |
| SRR7265414 | coleoptile | 4dA | 2.34 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.43 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.82 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.15 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.05 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.88 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.56 | MC |
| SRR7265378 | embryo | 1hA | 0.24 | MC |
| SRR7265390 | embryo | 12hA | 0.48 | MC |
| SRR7265398 | embryo | 24hN | 0.59 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.87 | MC |
| SRR1213691 | flower | wt | 1.66 | MC |
| SRR8240825 | leaf | wild_type | 0.22 | MC |
| SRR8240818 | leaf | wild_type | 0.27 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.44 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.38 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.73 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.40 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.07 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.30 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.67 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.17 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.15 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.14 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.60 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.62 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.48 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.75 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.09 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.33 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.24 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.01 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.88 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.68 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.53 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.70 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.61 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.63 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.46 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.13 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.34 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.13 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.34 | MC |
| SRR1761528 | leaf | drought | 1.13 | MC |
| SRR1761529 | leaf | drought | 1.34 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.10 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.25 | MC |
| SRR6417967 | leaf | H2O_control | 3.24 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.51 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.59 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.20 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.66 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.10 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.26 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.83 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.08 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.02 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.96 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.23 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.07 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.39 | MC |
| SRR1213692 | leaf | wt | 3.82 | MC |
| SRR1213693 | leaf | wt | 3.39 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.49 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.02 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.84 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.28 | MC |
| SRR6502100 | leaf | control | 2.11 | MC |
| SRR6502101 | leaf | control | 1.32 | MC |
| SRR6502102 | leaf | control | 1.51 | MC |
| SRR5856927 | leaf | control | 0.76 | MC |
| SRR5856928 | leaf | control | 1.30 | MC |
| SRR5856929 | leaf | control | 1.41 | MC |
| SRR5856930 | leaf | salt | 0.16 | MC |
| SRR5856931 | leaf | salt | 0.28 | MC |
| SRR5856932 | leaf | salt | 0.24 | MC |
| SRR5856933 | leaf | control | 1.21 | MC |
| SRR5856934 | leaf | control | 0.32 | MC |
| SRR5856935 | leaf | control | 0.60 | MC |
| SRR5856936 | leaf | salt | 0.19 | MC |
| SRR5856937 | leaf | salt | 0.14 | MC |
| SRR5856938 | leaf | salt | 0.17 | MC |
| SRR6168973 | leaf | none (control) | 0.59 | MC |
| SRR8582891 | panicle | PM | 3.64 | MC |
| SRR8582892 | panicle | PM | 4.87 | MC |
| SRR8582893 | panicle | PM | 3.59 | MC |
| SRR5110430 | panicle | Dawn | 1.49 | MC |
| SRR5110432 | panicle | Dawn | 0.43 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.28 | MC |
| SRR5110446 | panicle | Dusk | 0.50 | MC |
| SRR5110448 | panicle | Dusk | 0.57 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.33 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.91 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.28 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.48 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.67 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.30 | MC |
| SRR5126147 | root | "mock,1_day" | 0.74 | MC |
| SRR5126148 | root | "mock,1_day" | 0.31 | MC |
| SRR5126149 | root | "mock,1_day" | 3.38 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.56 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.55 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126153 | root | "mock,7_days" | 2.75 | MC |
| SRR5126155 | root | "mock,7_days" | 1.64 | MC |
| SRR5126157 | root | "mock,7_days" | 3.59 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.52 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.14 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.07 | MC |
| SRR5126165 | root | "mock,14_days" | 1.51 | MC |
| SRR5126167 | root | "mock,14_days" | 1.48 | MC |
| SRR5126169 | root | "mock,14_days" | 3.52 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.85 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.03 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.20 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.59 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.71 | MC |
| SRR4947479 | root | control | 1.11 | MC |
| SRR4947480 | root | control | 1.53 | MC |
| SRR4947482 | root | Al | 1.21 | MC |
| SRR4947483 | root | Al | 1.12 | MC |
| SRR4947484 | root | Al | 0.84 | MC |
| SRR4947485 | root | Al | 1.21 | MC |
| SRR4947487 | root | control | 2.48 | MC |
| SRR4947488 | root | control | 1.13 | MC |
| SRR4947489 | root | control | 0.88 | MC |
| SRR4947491 | root | Al | 1.50 | MC |
| SRR4947493 | root | Al | 0.80 | MC |
| SRR4947494 | root | control | 2.08 | MC |
| SRR4947497 | root | control | 2.15 | MC |
| SRR4947498 | root | Al | 2.59 | MC |
| SRR4947499 | root | Al | 1.63 | MC |
| SRR4947500 | root | Al | 1.36 | MC |
| SRR4947501 | root | Al | 0.54 | MC |
| SRR4947502 | root | control | 5.60 | MC |
| SRR4947503 | root | control | 4.07 | MC |
| SRR4947504 | root | control | 2.56 | MC |
| SRR4947505 | root | control | 1.79 | MC |
| SRR4947506 | root | Al | 3.64 | MC |
| SRR4947507 | root | Al | 2.60 | MC |
| SRR4947508 | root | Al | 0.77 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.58 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.61 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.98 | MC |
| SRR6502094 | root | control | 0.97 | MC |
| SRR6502095 | root | control | 1.22 | MC |
| SRR6502096 | root | control | 1.25 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.19 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.77 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.09 | MC |
| SRR6502106 | root | control | 2.48 | MC |
| SRR6502107 | root | control | 2.43 | MC |
| SRR6502108 | root | control | 3.00 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.84 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.35 | MC |
| SRR6441554 | seedling | wild_type | 1.25 | MC |
| SRR6441555 | seedling | wild_type | 1.73 | MC |
| SRR2154086 | seedling | wt | 3.54 | MC |
| SRR2154082 | seedling | wt | 0.46 | MC |
| SRR2154083 | seedling | wt | 0.76 | MC |
| SRR2154084 | seedling | wt | 2.17 | MC |
| SRR2154085 | seedling | wt | 1.22 | MC |
| SRR2154087 | seedling | wt | 2.14 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.30 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.59 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.07 | MC |
| SRR1944583 | seedling | no_treatment | 3.94 | MC |
| SRR358791 | seedling | wt | 2.64 | MC |
| SRR358792 | seedling | wt | 3.93 | MC |
| SRR358793 | seedling | wt | 3.19 | MC |
| SRR358794 | seedling | wt | 3.94 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.92 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.60 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.10 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.81 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.40 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.73 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.88 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.52 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.77 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.28 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.25 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.48 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.51 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.56 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.82 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.26 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.13 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.49 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.47 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.27 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.01 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.20 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.53 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.27 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.38 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.86 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.00 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.52 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.79 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.47 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.78 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.56 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.75 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.53 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.75 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.27 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.27 | MC |