| SRR4457249 | 2nd_leaf | DAH4 | 0.77 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.62 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.53 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.74 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.76 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.63 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.94 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.18 | MC |
| SRR3745125 | anther | wt | 1.20 | MC |
| SRR3745126 | anther | wt | 1.02 | MC |
| SRR3745127 | anther | wt | 1.31 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.78 | MC |
| SRR4947495 | root | control | 3.77 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.03 | MC |
| SRR7265401 | coleoptile | 2dA | 3.04 | MC |
| SRR7265404 | coleoptile | 2dN | 2.06 | MC |
| SRR7265414 | coleoptile | 4dA | 4.25 | MC |
| SRR7265415 | coleoptile | 4dN | 4.24 | MC |
| SRR7265416 | coleoptile | 4dN | 3.56 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.37 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.39 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.67 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.54 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.70 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.97 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.53 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.10 | MC |
| SRR7265380 | embryo | 1hN | 3.06 | MC |
| SRR7265382 | embryo | 3hA | 1.52 | MC |
| SRR7265383 | embryo | 3hA | 3.52 | MC |
| SRR7265388 | embryo | 12hA | 4.80 | MC |
| SRR7265391 | embryo | 12hN | 2.38 | MC |
| SRR7265393 | embryo | 12hN | 4.29 | MC |
| SRR7265396 | embryo | 24hA | 3.63 | MC |
| SRR7265397 | embryo | 24hN | 3.14 | MC |
| SRR7265398 | embryo | 24hN | 4.74 | MC |
| SRR2338868 | endosprem | high_temperature | 1.11 | MC |
| SRR976168 | flag_leaf | wild_type | 2.53 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.40 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.12 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.75 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.66 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.79 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.20 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.57 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.65 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.41 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.56 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.13 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.65 | MC |
| SRR8060835 | leaf | wild_type | 0.57 | MC |
| SRR8240825 | leaf | wild_type | 0.23 | MC |
| SRR8240826 | leaf | wild_type | 0.58 | MC |
| SRR8240819 | leaf | wild_type | 0.64 | MC |
| SRR8240820 | leaf | wild_type | 0.97 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.73 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.46 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.36 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.13 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.66 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.16 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.56 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.63 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.32 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.35 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.97 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.23 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.84 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.13 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.59 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.27 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.72 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.59 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.61 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.96 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.47 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.63 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.46 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.89 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.09 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.48 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.17 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.88 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.14 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.06 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.99 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.94 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.94 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.32 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.99 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.94 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.94 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.32 | MC |
| SRR1761528 | leaf | drought | 1.99 | MC |
| SRR1761529 | leaf | drought | 2.94 | MC |
| SRR1761530 | leaf | control | 1.94 | MC |
| SRR1761531 | leaf | control | 1.32 | MC |
| SRR504365 | leaf | wt | 0.20 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.91 | MC |
| SRR6417967 | leaf | H2O_control | 0.82 | MC |
| SRR6417968 | leaf | H2O_control | 0.77 | MC |
| SRR6417969 | leaf | H2O_control | 0.54 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.05 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.34 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.23 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.63 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.49 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.85 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.29 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.48 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.03 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.35 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.56 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.69 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.83 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.39 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.07 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.52 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.64 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.75 | MC |
| SRR6502090 | leaf | control | 3.83 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.58 | MC |
| SRR6502100 | leaf | control | 3.51 | MC |
| SRR6502102 | leaf | control | 4.18 | MC |
| SRR5856928 | leaf | control | 0.76 | MC |
| SRR5856929 | leaf | control | 0.36 | MC |
| SRR5856931 | leaf | salt | 0.21 | MC |
| SRR5856936 | leaf | salt | 0.27 | MC |
| SRR5856937 | leaf | salt | 0.21 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.20 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.37 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 1.56 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 0.90 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.95 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.84 | MC |
| SRR6168973 | leaf | none (control) | 0.38 | MC |
| SRR6168975 | leaf | none (control) | 1.61 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.71 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.45 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.35 | MC |
| SRR6168981 | leaf | none (control) | 1.86 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.81 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.73 | MC |
| SRR8582888 | panicle | AM | 0.32 | MC |
| SRR8582889 | panicle | AM | 0.20 | MC |
| SRR8582890 | panicle | AM | 0.26 | MC |
| SRR8582891 | panicle | PM | 0.70 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.93 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.24 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.43 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.48 | MC |
| SRR5110445 | panicle | Dusk | 3.76 | MC |
| SRR5110446 | panicle | Dusk | 2.79 | MC |
| SRR5110447 | panicle | Dusk | 1.28 | MC |
| SRR5110448 | panicle | Dusk | 3.42 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.02 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.44 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.66 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.27 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.69 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.15 | MC |
| SRR5126147 | root | "mock,1_day" | 3.88 | MC |
| SRR5126153 | root | "mock,7_days" | 0.56 | MC |
| SRR5126155 | root | "mock,7_days" | 0.84 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.85 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.51 | MC |
| SRR5126165 | root | "mock,14_days" | 0.73 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.73 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.28 | MC |
| SRR1213694 | root | wt | 1.45 | MC |
| SRR4947483 | root | Al | 3.23 | MC |
| SRR4947485 | root | Al | 3.94 | MC |
| SRR4947487 | root | control | 1.25 | MC |
| SRR4947492 | root | Al | 4.13 | MC |
| SRR4947498 | root | Al | 1.24 | MC |
| SRR4947499 | root | Al | 1.38 | MC |
| SRR4947504 | root | control | 4.73 | MC |
| SRR4947507 | root | Al | 1.08 | MC |
| SRR4947508 | root | Al | 0.56 | MC |
| SRR6502096 | root | control | 4.56 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.94 | MC |
| SRR1740434 | root_differentiation_zone | wt | 3.17 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.27 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.76 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.34 | MC |
| SRR2154083 | seedling | wt | 0.79 | MC |
| SRR2154084 | seedling | wt | 0.70 | MC |
| SRR2154087 | seedling | wt | 0.46 | MC |
| SRR3098743 | seedling | wt | 0.72 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.69 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.37 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.40 | MC |
| SRR1944583 | seedling | no_treatment | 3.14 | MC |
| SRR358791 | seedling | wt | 2.83 | MC |
| SRR358792 | seedling | wt | 3.10 | MC |
| SRR358793 | seedling | wt | 1.91 | MC |
| SRR358794 | seedling | wt | 2.28 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.31 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.52 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.75 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.91 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.19 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.75 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.45 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.31 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.08 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.79 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.60 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.70 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.37 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.93 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.42 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.21 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.33 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.78 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.92 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.31 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.70 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.21 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.99 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.89 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.80 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.02 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.60 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.10 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.00 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.66 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.13 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.42 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.82 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.04 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.63 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.49 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.38 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.49 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |